| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ydhV [H]
Identifier: 160876355
GI number: 160876355
Start: 3821724
End: 3823847
Strand: Reverse
Name: ydhV [H]
Synonym: Sbal195_3249
Alternate gene names: 160876355
Gene position: 3823847-3821724 (Counterclockwise)
Preceding gene: 160876356
Following gene: 160876354
Centisome position: 71.51
GC content: 47.6
Gene sequence:
>2124_bases ATGAGTAATATAATTGGTGGTTGGGCAGGAAAAGTCCTTAGAGTTAATTTAACGACAAATACGATTTCGTATGATCCCAT AGAAAAATATTATGACTATATTGGTGGTATGGGTATTGGCTATAAAATATTGTGGGATGGTCATAAGGACAATATAAAGG CAATCGATCCTGAGAATATTATTGTCTTCTCTGCGGGACCATTAACGGGGTCAGGGGTGATTTGTACTGGACGAACAACG ATTACTTCCCGTAGCCCCGTGATTGAAAAACACCTTATTGCCGACGGTCACTTTGGTGGCCATTTTTCACCTGCAATGAA ATTTGCCGGCTTCGATGCGATTGCAATTGAAGGCAAAGCAGCGAGCCCTGTGTGGCTGAAAATTGTCGATGACAAGGTCA CCTTAGAACCTGCCGATGCGCTATGGGGCAAAGGCATATTTGATACCCACGCCATGATAGCGCAAATGATGGGCCCCAAT GCACAAGTGGCGGCCATTGGCCAAGCGGGTGAAAACCAAGTGCCGCTGTCTGTCATCATGACTCAGGGTGGGCATTCTGC GGGTGGTCACGGCTCAGTTATGGGCTCAAAAAATTGTAAAGGGATCGGCATTATCGGCACGGGGGCCGTCAAAATTGCCG CCAATAATGAAAAGATGCGCGCCTTAGATGACCATATTTTAGGGATTATCGGCGCCAATAATAATGGTGTGGTGCCTTCT ACGCCGCAATCTTGGGCCGAGTACTCAGCCCCTATCAGTCGCTGGAAATCACGACCTGGCCTTAAGTGGGGCGCCGCTGA TCAAGAAATTGATTTAGGCGAAGTGCCTTGGAATGAGCGTAACCGCATTGGGTTTCGCACTTCGATGGCCGAAAGCTACA TAGGCGTCGAATATGCCAACAAGTGGATGAAGCGTACTGGCGGTTGCCATTCATGCCCAATACGTTGTTTCTGCGAGCTT AAAGTCCCTGAACTGAAGAGTAAATATGGTCGTAAGACCGAGCATATTGCCAACGTTTGTATGGGATTTCTCGTGCCTCA GTATTTGATGGGCACTACAAACGGCTCAGAAGCACATGCAATGGCGGGAGCTTTGGGGGCGCAGATCCTCGATGACTACG GTATTTGGTGTAACTATGGTTTGATTTCTCATATCTTTAAGTTTTTAAAAACACACGATATGTTCAAAGATTTACTGCCA GAAGAGGAATACAACAGCATTCCTTGGGCGCTTTGGGATAATCAAGATCCTGCCTTCTTAATTGATTTCTATCGCCGCAT TGCCTACAAAGAAGGTGAAATTTCCCATATGGCGGATGGCTTATATGACTTAATCGCGCGTTGGGGATTGGATGGCACAA ACCCCGCACTAGGGTATTGGGACATACATAAAGAGAGTAAAACCAAGGTCTTTAACCGAAAAACTAATGCCGCCGTGCAC CATGCGAGTGAAACTGCAGGTCAGGTGGGCACCTTAATCAACGTCGTCTTTAACCGCGATGCCCAGTGCCATTCCCACAT CAACATAGTTAACAGTGGGTTACCCCACGATATGACAGTCGCTATCGCCGAGAAAAAATGGGGCGAGGGCGCCTTTGATA AGGTGCAGTGGTATACCCCGATTAATGCCGCTAAGGTTCGTTTTGCTAAGTGGTCTTTAGTGAAAAACGTGCTGCATGAC TCGCTGACACTGTGTAATTGGATGTTCCCGCTTTTGGCATCGCCCGATAAGAACCGTAATTATGAAGGCGATAGCACCAT AGAATCGCAAATGTTCAGCTTAGTCACAGGGATTGAAACCAGTGAAACTGAGTTAGATTTCAAGGCGGAAAGGGTCTTGC ATCTTCACCGCGCCTTAACCATGTTGCAGATGAATGAGGGCAATATGCGTGAAGAGCACGATGTGCTCAGTGACTGGGTT TACGATATGGACCCAGACAAAAACTTTGGCGAAGAGGGCACCATCAAGATGGATCGCGCCGACATGCAAACCTCGCTGGA CATGTTCTATGAAGCCTTTGGTTGGGATATTCAAACGGGAGCACCAACGCGGGCTACACTCGACAAGTTTAGTTTGGGCT TTGTCGCCGACAAATTAGCGGCGCGAGGCTTGTTACCCGCTTGA
Upstream 100 bases:
>100_bases ACTGGGGCAATTAAATTTTATCCTTGGGATGAAGCCGAAGCTGCATTAGAACAATATGAAAAATATACCGGCTTAGTTTC TTGAATCGAGGTGAAATATG
Downstream 100 bases:
>100_bases ACACTCTAGTTGGGCACTATGATTGGCGTTATGACTGGACATTATGAGTGAAAAAATGATTGAACTCGTCGGTTATATCC GAGTATTTAGCCAACACGGA
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 707; Mature: 706
Protein sequence:
>707_residues MSNIIGGWAGKVLRVNLTTNTISYDPIEKYYDYIGGMGIGYKILWDGHKDNIKAIDPENIIVFSAGPLTGSGVICTGRTT ITSRSPVIEKHLIADGHFGGHFSPAMKFAGFDAIAIEGKAASPVWLKIVDDKVTLEPADALWGKGIFDTHAMIAQMMGPN AQVAAIGQAGENQVPLSVIMTQGGHSAGGHGSVMGSKNCKGIGIIGTGAVKIAANNEKMRALDDHILGIIGANNNGVVPS TPQSWAEYSAPISRWKSRPGLKWGAADQEIDLGEVPWNERNRIGFRTSMAESYIGVEYANKWMKRTGGCHSCPIRCFCEL KVPELKSKYGRKTEHIANVCMGFLVPQYLMGTTNGSEAHAMAGALGAQILDDYGIWCNYGLISHIFKFLKTHDMFKDLLP EEEYNSIPWALWDNQDPAFLIDFYRRIAYKEGEISHMADGLYDLIARWGLDGTNPALGYWDIHKESKTKVFNRKTNAAVH HASETAGQVGTLINVVFNRDAQCHSHINIVNSGLPHDMTVAIAEKKWGEGAFDKVQWYTPINAAKVRFAKWSLVKNVLHD SLTLCNWMFPLLASPDKNRNYEGDSTIESQMFSLVTGIETSETELDFKAERVLHLHRALTMLQMNEGNMREEHDVLSDWV YDMDPDKNFGEEGTIKMDRADMQTSLDMFYEAFGWDIQTGAPTRATLDKFSLGFVADKLAARGLLPA
Sequences:
>Translated_707_residues MSNIIGGWAGKVLRVNLTTNTISYDPIEKYYDYIGGMGIGYKILWDGHKDNIKAIDPENIIVFSAGPLTGSGVICTGRTT ITSRSPVIEKHLIADGHFGGHFSPAMKFAGFDAIAIEGKAASPVWLKIVDDKVTLEPADALWGKGIFDTHAMIAQMMGPN AQVAAIGQAGENQVPLSVIMTQGGHSAGGHGSVMGSKNCKGIGIIGTGAVKIAANNEKMRALDDHILGIIGANNNGVVPS TPQSWAEYSAPISRWKSRPGLKWGAADQEIDLGEVPWNERNRIGFRTSMAESYIGVEYANKWMKRTGGCHSCPIRCFCEL KVPELKSKYGRKTEHIANVCMGFLVPQYLMGTTNGSEAHAMAGALGAQILDDYGIWCNYGLISHIFKFLKTHDMFKDLLP EEEYNSIPWALWDNQDPAFLIDFYRRIAYKEGEISHMADGLYDLIARWGLDGTNPALGYWDIHKESKTKVFNRKTNAAVH HASETAGQVGTLINVVFNRDAQCHSHINIVNSGLPHDMTVAIAEKKWGEGAFDKVQWYTPINAAKVRFAKWSLVKNVLHD SLTLCNWMFPLLASPDKNRNYEGDSTIESQMFSLVTGIETSETELDFKAERVLHLHRALTMLQMNEGNMREEHDVLSDWV YDMDPDKNFGEEGTIKMDRADMQTSLDMFYEAFGWDIQTGAPTRATLDKFSLGFVADKLAARGLLPA >Mature_706_residues SNIIGGWAGKVLRVNLTTNTISYDPIEKYYDYIGGMGIGYKILWDGHKDNIKAIDPENIIVFSAGPLTGSGVICTGRTTI TSRSPVIEKHLIADGHFGGHFSPAMKFAGFDAIAIEGKAASPVWLKIVDDKVTLEPADALWGKGIFDTHAMIAQMMGPNA QVAAIGQAGENQVPLSVIMTQGGHSAGGHGSVMGSKNCKGIGIIGTGAVKIAANNEKMRALDDHILGIIGANNNGVVPST PQSWAEYSAPISRWKSRPGLKWGAADQEIDLGEVPWNERNRIGFRTSMAESYIGVEYANKWMKRTGGCHSCPIRCFCELK VPELKSKYGRKTEHIANVCMGFLVPQYLMGTTNGSEAHAMAGALGAQILDDYGIWCNYGLISHIFKFLKTHDMFKDLLPE EEYNSIPWALWDNQDPAFLIDFYRRIAYKEGEISHMADGLYDLIARWGLDGTNPALGYWDIHKESKTKVFNRKTNAAVHH ASETAGQVGTLINVVFNRDAQCHSHINIVNSGLPHDMTVAIAEKKWGEGAFDKVQWYTPINAAKVRFAKWSLVKNVLHDS LTLCNWMFPLLASPDKNRNYEGDSTIESQMFSLVTGIETSETELDFKAERVLHLHRALTMLQMNEGNMREEHDVLSDWVY DMDPDKNFGEEGTIKMDRADMQTSLDMFYEAFGWDIQTGAPTRATLDKFSLGFVADKLAARGLLPA
Specific function: Unknown
COG id: COG2414
COG function: function code C; Aldehyde:ferredoxin oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AOR/FOR family [H]
Homologues:
Organism=Escherichia coli, GI1787962, Length=709, Percent_Identity=45.9802538787024, Blast_Score=632, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013985 - InterPro: IPR013983 - InterPro: IPR001203 [H]
Pfam domain/function: PF01314 AFOR_C; PF02730 AFOR_N [H]
EC number: NA
Molecular weight: Translated: 78082; Mature: 77951
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIIGGWAGKVLRVNLTTNTISYDPIEKYYDYIGGMGIGYKILWDGHKDNIKAIDPENI CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCE IVFSAGPLTGSGVICTGRTTITSRSPVIEKHLIADGHFGGHFSPAMKFAGFDAIAIEGKA EEEECCCCCCCCEEEECCEEECCCCCCHHHHHEECCCCCCCCCHHHHHCCCCEEEECCCC ASPVWLKIVDDKVTLEPADALWGKGIFDTHAMIAQMMGPNAQVAAIGQAGENQVPLSVIM CCCEEEEEECCEEEECCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEE TQGGHSAGGHGSVMGSKNCKGIGIIGTGAVKIAANNEKMRALDDHILGIIGANNNGVVPS ECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCHHHHHCCCEEEEEECCCCCCCCC TPQSWAEYSAPISRWKSRPGLKWGAADQEIDLGEVPWNERNRIGFRTSMAESYIGVEYAN CCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH KWMKRTGGCHSCPIRCFCELKVPELKSKYGRKTEHIANVCMGFLVPQYLMGTTNGSEAHA HHHHHCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MAGALGAQILDDYGIWCNYGLISHIFKFLKTHDMFKDLLPEEEYNSIPWALWDNQDPAFL HHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHH IDFYRRIAYKEGEISHMADGLYDLIARWGLDGTNPALGYWDIHKESKTKVFNRKTNAAVH HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHE HASETAGQVGTLINVVFNRDAQCHSHINIVNSGLPHDMTVAIAEKKWGEGAFDKVQWYTP ECHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECC INAAKVRFAKWSLVKNVLHDSLTLCNWMFPLLASPDKNRNYEGDSTIESQMFSLVTGIET CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC SETELDFKAERVLHLHRALTMLQMNEGNMREEHDVLSDWVYDMDPDKNFGEEGTIKMDRA CCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECHH DMQTSLDMFYEAFGWDIQTGAPTRATLDKFSLGFVADKLAARGLLPA HHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SNIIGGWAGKVLRVNLTTNTISYDPIEKYYDYIGGMGIGYKILWDGHKDNIKAIDPENI CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCE IVFSAGPLTGSGVICTGRTTITSRSPVIEKHLIADGHFGGHFSPAMKFAGFDAIAIEGKA EEEECCCCCCCCEEEECCEEECCCCCCHHHHHEECCCCCCCCCHHHHHCCCCEEEECCCC ASPVWLKIVDDKVTLEPADALWGKGIFDTHAMIAQMMGPNAQVAAIGQAGENQVPLSVIM CCCEEEEEECCEEEECCCHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEE TQGGHSAGGHGSVMGSKNCKGIGIIGTGAVKIAANNEKMRALDDHILGIIGANNNGVVPS ECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCHHHHHCCCEEEEEECCCCCCCCC TPQSWAEYSAPISRWKSRPGLKWGAADQEIDLGEVPWNERNRIGFRTSMAESYIGVEYAN CCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH KWMKRTGGCHSCPIRCFCELKVPELKSKYGRKTEHIANVCMGFLVPQYLMGTTNGSEAHA HHHHHCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MAGALGAQILDDYGIWCNYGLISHIFKFLKTHDMFKDLLPEEEYNSIPWALWDNQDPAFL HHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHH IDFYRRIAYKEGEISHMADGLYDLIARWGLDGTNPALGYWDIHKESKTKVFNRKTNAAVH HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHCCCCCHHHE HASETAGQVGTLINVVFNRDAQCHSHINIVNSGLPHDMTVAIAEKKWGEGAFDKVQWYTP ECHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECC INAAKVRFAKWSLVKNVLHDSLTLCNWMFPLLASPDKNRNYEGDSTIESQMFSLVTGIET CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC SETELDFKAERVLHLHRALTMLQMNEGNMREEHDVLSDWVYDMDPDKNFGEEGTIKMDRA CCCCCCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECHH DMQTSLDMFYEAFGWDIQTGAPTRATLDKFSLGFVADKLAARGLLPA HHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023191; 9278503 [H]