Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 160876328

GI number: 160876328

Start: 3791378

End: 3791761

Strand: Direct

Name: yjgF [C]

Synonym: Sbal195_3222

Alternate gene names: 160876328

Gene position: 3791378-3791761 (Clockwise)

Preceding gene: 160876326

Following gene: 160876329

Centisome position: 70.9

GC content: 46.88

Gene sequence:

>384_bases
ATGAAAACCATTATCCACGCAGAAAACGCTCCCGCAGCCATTGGCCCTTATTCACACGGTACGAGCTATGGCAATCTCAT
CTTCACCTCTGGCCAACTACCCGTTTGTAAAGAGAAAGGCGGCGTAGTTGACGGTGGGATCACCGCACAATCGATTCAGT
CGCTAGACAATCTCAAATACGTGCTTGAAGCGGGTGGCGGTAGCTTAGAAACGGTTCTCAAAACCACTTGTTATCTTGCT
GAGATCAGTGACTTTGCCGCCTTTAACGAAGTGTATAAAACCTATTTTAAAACTGACTGCCCAGCGCGTAGCTGTTTTGC
GGTGAAGGATCTTCCACTGTGCGTTAAAGTGGAAGTTGAAGCGATAGCACACGTGAAAATTTAA

Upstream 100 bases:

>100_bases
AAATTTTTTAAAAAATAATTGCAATAAATGCAAAAAATACAAATAATGTTGCACATCAGCCGACCGCGGCATTCAATTTT
ATTTGCACGTTGGAGAGACA

Downstream 100 bases:

>100_bases
GTATTAACAAAAGGTTGTAAGCTGATGAAACCCCAATGGCAGCAGTATATTAACATCATCAAACAAGTCGTTAAGCCCGC
ATTAGGCTGCACTGAGCCCA

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKTIIHAENAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVDGGITAQSIQSLDNLKYVLEAGGGSLETVLKTTCYLA
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLCVKVEVEAIAHVKI

Sequences:

>Translated_127_residues
MKTIIHAENAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVDGGITAQSIQSLDNLKYVLEAGGGSLETVLKTTCYLA
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLCVKVEVEAIAHVKI
>Mature_127_residues
MKTIIHAENAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVDGGITAQSIQSLDNLKYVLEAGGGSLETVLKTTCYLA
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLCVKVEVEAIAHVKI

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=39.8373983739837, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=47.6190476190476, Blast_Score=117, Evalue=3e-28,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=43.6507936507937, Blast_Score=112, Evalue=7e-27,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=26.6129032258064, Blast_Score=62, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=46.7213114754098, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=46.7213114754098, Blast_Score=105, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=46.7213114754098, Blast_Score=105, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=51, Blast_Score=100, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6322138, Length=114, Percent_Identity=38.5964912280702, Blast_Score=91, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=39.0243902439024, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13563; Mature: 13563

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIIHAENAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVDGGITAQSIQSLDNLKY
CCEEEECCCCCCEECCCCCCCCCCCEEEECCCCCEECCCCCEEECCCCHHHHHHHHHHHE
VLEAGGGSLETVLKTTCYLAEISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLCVKVEVE
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEE
AIAHVKI
EEEEECC
>Mature Secondary Structure
MKTIIHAENAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVDGGITAQSIQSLDNLKY
CCEEEECCCCCCEECCCCCCCCCCCEEEECCCCCEECCCCCEEECCCCHHHHHHHHHHHE
VLEAGGGSLETVLKTTCYLAEISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLCVKVEVE
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEE
AIAHVKI
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]