| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ushA [C]
Identifier: 160876259
GI number: 160876259
Start: 3728140
End: 3729885
Strand: Direct
Name: ushA [C]
Synonym: Sbal195_3153
Alternate gene names: 160876259
Gene position: 3728140-3729885 (Clockwise)
Preceding gene: 160876258
Following gene: 160876261
Centisome position: 69.72
GC content: 50.11
Gene sequence:
>1746_bases ATGACACAGGGTTACACGCTCTCACTCGCGCACATCAATGACACCCATTCGAATTTTGAACCCAGCCGCGTCCAATTTAA CCTTAACATCGGCCAGCATAAGCTTGATGTAACCAGCCATAGCGGTGGTTATGCCCGCATCGGCCATCACATCAGTAAGA CACGTCAAGCCGCCGCACAAACCGATACGCCGTTTGTTTTCCTGCACGGTGGTGACAGCTTCCAAGGCACGCTTTATTTC AGCCATTTTAAAGGCAAGGCCAACGCCCACTTACTCAATCTGTTAGCGCCTGATGCTATGGTCATTGGCAACCACGATAT CGATGAAGGTAACGCCAGACTTGCCGAGTTTGCTAAGCAGATTGATTTCCCATTGCTTGCGGGCAACATGGATTTAAGCC AAGAAGATCTCAACAAACCCGGTTGTCTGCGCGGTTTGCCTAATATTTTGGATTATGATCATCAGCAAAAACGCGCGAAA TACCTGCTTAAGCCTTTCCACGATAAGACGTTAGCCATTGTCGGCATTACCTTAGATCAAATGAAAGAGATCGCTCGCCC CGATCCTGACACTCATTTTGTCGATGCTATCGCGACAACCGCACGCACGGTTGAGCACCTTAAAAATCAAGGTATTAAAC ATATCATAGTGCTCAGCCACTTAGGCTTAGATCAAGATAAACGCCTCGCGGCCGAAGTGGAGGGTATTAGCCTTATCGTC GGTGGTCACACGCATACGCTACAGGGCGATTTTCGCGCCTTAAGTTTGAGCAACCTGCCCTACGGTGAAGTCATTAACAA CACGCCGATAGTGCATGCAGGTAAATATGCCGAAGTCGTCGGCTTAGCCGAGATAACGTTTGACGCTGAAGGCAAAGTGC TGAATTTAAAGGGCGGCAACTACTTCATGCTGGATCAACACTTTATCTTAAGTGCTAACACAGCTGTCGATAATCAAGAT TACCAAGCGGTGCGTCAACAGCTCAGTCAGCACCCAAATGTCCTTTGGGATGATGCCGATGCCGATATTGATGGCGTGAT CCGAGATATCTACAAACCCGCCATCGCGGATATGGAGAACAAAGTTTTAGCACTGGTTCCAAAAAACTTAGTCCATACAC GCTTGCCCTCTAAGGCCCTGCCCCACGGCAGTGAAATTGCGCCTTGGGTCAGTCGCAGCATGTTCCAAGAAGCTAAGCTT GTCGATCCTAGGGTGAACTTTGCCCTGCATAATGCCGGCGGTGTTCGCCAGTCGGTGGCCCAAGGTCAGTTGACGCTGGC GGATGTGATGGGGCAATTACTGCCCTTCGAATTGCCGCTGGTTAAGTATGAAATTCAAGGCCAGTTCCTCTATCAAGCGC TCGAGTCGGCGATTAACGCGGCGACCAACAACAGCGTCCGTGGCACTGGTGCGGGTAGCTTCCCTTACACCTACGGCTTA CGGTATTACTACGATGGCCGGCGTCCACTGGGCGAGCGTTTATTTAGATTGGAGATGATGCAGCAGGACAGCCAATCTCT TTGGTATCCGGTTGAGCCTGAGTCACTGTATGTCGGAGTATCGACCTCTTACACTGCTGCAGGTAAGGAAGGCTATCATC CATTACTGCAAGCTCGCTGGCAGGAGTCGATGGAGTCTCTGACGTTGCCACAGGCCTTTATTCGATTCTTAAATCGCTCA CCGAATCTGTCTGATTTACTGTCACAGCACGTGCATTACACCAGCCACAGCCAACGTATGGGTTAA
Upstream 100 bases:
>100_bases TCCCTTTATTCTTTTAGAATGCAAATGACTCAGAACCGTCTGAGCCTCGCATTTTGAGGTCGCTTGGGTATATACTCACC CGCCGTAATAGAGGTAAGTT
Downstream 100 bases:
>100_bases GTGCCAATGCTCCTCATGGCGTCAACATTGATGCAGTGAGGAGCAAAGTAAATGAATGAGTGACGACATAGAAAACGTTG AATAGACAGTGATGCAAAAC
Product: 5'-nucleotidase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 581; Mature: 580
Protein sequence:
>581_residues MTQGYTLSLAHINDTHSNFEPSRVQFNLNIGQHKLDVTSHSGGYARIGHHISKTRQAAAQTDTPFVFLHGGDSFQGTLYF SHFKGKANAHLLNLLAPDAMVIGNHDIDEGNARLAEFAKQIDFPLLAGNMDLSQEDLNKPGCLRGLPNILDYDHQQKRAK YLLKPFHDKTLAIVGITLDQMKEIARPDPDTHFVDAIATTARTVEHLKNQGIKHIIVLSHLGLDQDKRLAAEVEGISLIV GGHTHTLQGDFRALSLSNLPYGEVINNTPIVHAGKYAEVVGLAEITFDAEGKVLNLKGGNYFMLDQHFILSANTAVDNQD YQAVRQQLSQHPNVLWDDADADIDGVIRDIYKPAIADMENKVLALVPKNLVHTRLPSKALPHGSEIAPWVSRSMFQEAKL VDPRVNFALHNAGGVRQSVAQGQLTLADVMGQLLPFELPLVKYEIQGQFLYQALESAINAATNNSVRGTGAGSFPYTYGL RYYYDGRRPLGERLFRLEMMQQDSQSLWYPVEPESLYVGVSTSYTAAGKEGYHPLLQARWQESMESLTLPQAFIRFLNRS PNLSDLLSQHVHYTSHSQRMG
Sequences:
>Translated_581_residues MTQGYTLSLAHINDTHSNFEPSRVQFNLNIGQHKLDVTSHSGGYARIGHHISKTRQAAAQTDTPFVFLHGGDSFQGTLYF SHFKGKANAHLLNLLAPDAMVIGNHDIDEGNARLAEFAKQIDFPLLAGNMDLSQEDLNKPGCLRGLPNILDYDHQQKRAK YLLKPFHDKTLAIVGITLDQMKEIARPDPDTHFVDAIATTARTVEHLKNQGIKHIIVLSHLGLDQDKRLAAEVEGISLIV GGHTHTLQGDFRALSLSNLPYGEVINNTPIVHAGKYAEVVGLAEITFDAEGKVLNLKGGNYFMLDQHFILSANTAVDNQD YQAVRQQLSQHPNVLWDDADADIDGVIRDIYKPAIADMENKVLALVPKNLVHTRLPSKALPHGSEIAPWVSRSMFQEAKL VDPRVNFALHNAGGVRQSVAQGQLTLADVMGQLLPFELPLVKYEIQGQFLYQALESAINAATNNSVRGTGAGSFPYTYGL RYYYDGRRPLGERLFRLEMMQQDSQSLWYPVEPESLYVGVSTSYTAAGKEGYHPLLQARWQESMESLTLPQAFIRFLNRS PNLSDLLSQHVHYTSHSQRMG >Mature_580_residues TQGYTLSLAHINDTHSNFEPSRVQFNLNIGQHKLDVTSHSGGYARIGHHISKTRQAAAQTDTPFVFLHGGDSFQGTLYFS HFKGKANAHLLNLLAPDAMVIGNHDIDEGNARLAEFAKQIDFPLLAGNMDLSQEDLNKPGCLRGLPNILDYDHQQKRAKY LLKPFHDKTLAIVGITLDQMKEIARPDPDTHFVDAIATTARTVEHLKNQGIKHIIVLSHLGLDQDKRLAAEVEGISLIVG GHTHTLQGDFRALSLSNLPYGEVINNTPIVHAGKYAEVVGLAEITFDAEGKVLNLKGGNYFMLDQHFILSANTAVDNQDY QAVRQQLSQHPNVLWDDADADIDGVIRDIYKPAIADMENKVLALVPKNLVHTRLPSKALPHGSEIAPWVSRSMFQEAKLV DPRVNFALHNAGGVRQSVAQGQLTLADVMGQLLPFELPLVKYEIQGQFLYQALESAINAATNNSVRGTGAGSFPYTYGLR YYYDGRRPLGERLFRLEMMQQDSQSLWYPVEPESLYVGVSTSYTAAGKEGYHPLLQARWQESMESLTLPQAFIRFLNRSP NLSDLLSQHVHYTSHSQRMG
Specific function: Degradation Of External Udp-Glucose To Uridine Monophosphate And Glucose-1-Phosphate, Which Can Then Be Used By The Cell. [C]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=548, Percent_Identity=24.4525547445255, Blast_Score=124, Evalue=2e-28, Organism=Drosophila melanogaster, GI28573524, Length=545, Percent_Identity=28.6238532110092, Blast_Score=177, Evalue=2e-44, Organism=Drosophila melanogaster, GI24641187, Length=547, Percent_Identity=26.691042047532, Blast_Score=156, Evalue=3e-38, Organism=Drosophila melanogaster, GI19922444, Length=560, Percent_Identity=24.6428571428571, Blast_Score=139, Evalue=7e-33, Organism=Drosophila melanogaster, GI19922446, Length=512, Percent_Identity=25.78125, Blast_Score=138, Evalue=9e-33, Organism=Drosophila melanogaster, GI24654424, Length=512, Percent_Identity=25.78125, Blast_Score=138, Evalue=9e-33, Organism=Drosophila melanogaster, GI221329836, Length=590, Percent_Identity=24.406779661017, Blast_Score=132, Evalue=6e-31,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 - InterPro: IPR006420 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 64598; Mature: 64467
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQGYTLSLAHINDTHSNFEPSRVQFNLNIGQHKLDVTSHSGGYARIGHHISKTRQAAAQ CCCCEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHC TDTPFVFLHGGDSFQGTLYFSHFKGKANAHLLNLLAPDAMVIGNHDIDEGNARLAEFAKQ CCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH IDFPLLAGNMDLSQEDLNKPGCLRGLPNILDYDHQQKRAKYLLKPFHDKTLAIVGITLDQ CCCCEEECCCCCCHHHCCCCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHH MKEIARPDPDTHFVDAIATTARTVEHLKNQGIKHIIVLSHLGLDQDKRLAAEVEGISLIV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCEEEEE GGHTHTLQGDFRALSLSNLPYGEVINNTPIVHAGKYAEVVGLAEITFDAEGKVLNLKGGN CCCEEEECCCCEEEEECCCCCHHHHCCCCEEECCCHHHHEEEEEEEECCCCCEEEECCCC YFMLDQHFILSANTAVDNQDYQAVRQQLSQHPNVLWDDADADIDGVIRDIYKPAIADMEN EEEEECEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCC KVLALVPKNLVHTRLPSKALPHGSEIAPWVSRSMFQEAKLVDPRVNFALHNAGGVRQSVA CEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHH QGQLTLADVMGQLLPFELPLVKYEIQGQFLYQALESAINAATNNSVRGTGAGSFPYTYGL CCCEEHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECE RYYYDGRRPLGERLFRLEMMQQDSQSLWYPVEPESLYVGVSTSYTAAGKEGYHPLLQARW EEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHH QESMESLTLPQAFIRFLNRSPNLSDLLSQHVHYTSHSQRMG HHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TQGYTLSLAHINDTHSNFEPSRVQFNLNIGQHKLDVTSHSGGYARIGHHISKTRQAAAQ CCCEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHC TDTPFVFLHGGDSFQGTLYFSHFKGKANAHLLNLLAPDAMVIGNHDIDEGNARLAEFAKQ CCCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHH IDFPLLAGNMDLSQEDLNKPGCLRGLPNILDYDHQQKRAKYLLKPFHDKTLAIVGITLDQ CCCCEEECCCCCCHHHCCCCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHH MKEIARPDPDTHFVDAIATTARTVEHLKNQGIKHIIVLSHLGLDQDKRLAAEVEGISLIV HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCEEEEE GGHTHTLQGDFRALSLSNLPYGEVINNTPIVHAGKYAEVVGLAEITFDAEGKVLNLKGGN CCCEEEECCCCEEEEECCCCCHHHHCCCCEEECCCHHHHEEEEEEEECCCCCEEEECCCC YFMLDQHFILSANTAVDNQDYQAVRQQLSQHPNVLWDDADADIDGVIRDIYKPAIADMEN EEEEECEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCC KVLALVPKNLVHTRLPSKALPHGSEIAPWVSRSMFQEAKLVDPRVNFALHNAGGVRQSVA CEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHH QGQLTLADVMGQLLPFELPLVKYEIQGQFLYQALESAINAATNNSVRGTGAGSFPYTYGL CCCEEHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECE RYYYDGRRPLGERLFRLEMMQQDSQSLWYPVEPESLYVGVSTSYTAAGKEGYHPLLQARW EEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHH QESMESLTLPQAFIRFLNRSPNLSDLLSQHVHYTSHSQRMG HHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]