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The map label for this gene is yeaM [H]

Identifier: 160876112

GI number: 160876112

Start: 3571212

End: 3571982

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal195_3003

Alternate gene names: 160876112

Gene position: 3571982-3571212 (Counterclockwise)

Preceding gene: 160876119

Following gene: 160876104

Centisome position: 66.8

GC content: 50.06

Gene sequence:

>771_bases
ATGTTACTTAAGCGAACGCTCAAGCCGTTTGAACATGTGCAGCGCCATCGTCATTCTTGGGGACAGGTCATTTATGCCAG
CCAAGGCGTGTTGAGTGTGATTACGCCTGCGGGGCGTTACATAGTGCCGCCTGAACAAGCGGTGTGGGTGCCTCCCTTTG
TCGATCATGAGGTTATCGCGCTAAGTCAGGTGCAATTGAGCAGTCTGTATTTGGATGACACCCAGATAGGCGGTTTTCCA
CCCGACTGTACTTGTTTGAGTGTGAAGCCTGTTTTGCAGTTGTTACTGCAAGAGGCTAATGCCTTAGTGAAGAGTGAGGC
TGGGGTGATTGATCCCGATTTTAAGGATAGCGTCATGCGACTGTTGATGGTGATCCGTGACTTTATGGTGCTCGCCCCTA
AGGTCGCCTTGGATTTACCTTATCCTAAGGATAAAAAATTACTGCGCATTACCGAGGCTTTGCTTGCGGATCCAAGCGAG
CAACGCACTTTGGTGGATTGGCAGCGGGAGGTCGGCGCCTCGGCCCGCACGTTAGCGAGATTATTTAAACAGCAAACTGG
GCTAAGGTATAGCCAATGGTTGCAAAGGCTTAGGTTGCAGGTGGCGATTCAAATGCTCAGCCGAGGTGAATCAGTGCTCA
CTACAGCGTTATCTTTAGGTTATGCCTCGGGTTCAGCCTTTGGTTATATGTTCAGACAGTTGATGGGCGTCGCTCCGAGT
CAGTACCTGTTAGCGCAAAGTACAGTGCCAAAAGTACAGTGCCAAAAATAA

Upstream 100 bases:

>100_bases
GAATCAAGTAACTGACACTCCTTTATCTCAGCAGCACATCACTCAGCACACTCAGGTCGCACCTTCACGTTTAGCCGCCA
CAGGGCTAAGCGCGTCCATC

Downstream 100 bases:

>100_bases
GAAGATAAACAGCCACAGATAAAAAAGTAATGTCGCGAGTGATCGACGAAGGTCAATAAAAGTCCAATAAAAAGCCAATA
AAAAACGCACTTAAGCTGGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLLKRTLKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFP
PDCTCLSVKPVLQLLLQEANALVKSEAGVIDPDFKDSVMRLLMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSE
QRTLVDWQREVGASARTLARLFKQQTGLRYSQWLQRLRLQVAIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPS
QYLLAQSTVPKVQCQK

Sequences:

>Translated_256_residues
MLLKRTLKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFP
PDCTCLSVKPVLQLLLQEANALVKSEAGVIDPDFKDSVMRLLMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSE
QRTLVDWQREVGASARTLARLFKQQTGLRYSQWLQRLRLQVAIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPS
QYLLAQSTVPKVQCQK
>Mature_256_residues
MLLKRTLKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIALSQVQLSSLYLDDTQIGGFP
PDCTCLSVKPVLQLLLQEANALVKSEAGVIDPDFKDSVMRLLMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSE
QRTLVDWQREVGASARTLARLFKQQTGLRYSQWLQRLRLQVAIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPS
QYLLAQSTVPKVQCQK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=235, Percent_Identity=31.4893617021277, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28703; Mature: 28703

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKRTLKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIA
CCHHHHCCHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCEEECCCCCEECCCCCCCHHHH
LSQVQLSSLYLDDTQIGGFPPDCTCLSVKPVLQLLLQEANALVKSEAGVIDPDFKDSVMR
HHHHHHHHHEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LLMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLAR
HHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHH
LFKQQTGLRYSQWLQRLRLQVAIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPS
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
QYLLAQSTVPKVQCQK
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLLKRTLKPFEHVQRHRHSWGQVIYASQGVLSVITPAGRYIVPPEQAVWVPPFVDHEVIA
CCHHHHCCHHHHHHHHHHHHCCEEEECCCHHHHCCCCCCEEECCCCCEECCCCCCCHHHH
LSQVQLSSLYLDDTQIGGFPPDCTCLSVKPVLQLLLQEANALVKSEAGVIDPDFKDSVMR
HHHHHHHHHEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LLMVIRDFMVLAPKVALDLPYPKDKKLLRITEALLADPSEQRTLVDWQREVGASARTLAR
HHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHH
LFKQQTGLRYSQWLQRLRLQVAIQMLSRGESVLTTALSLGYASGSAFGYMFRQLMGVAPS
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
QYLLAQSTVPKVQCQK
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]