| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yqjI [H]
Identifier: 160876079
GI number: 160876079
Start: 3525733
End: 3527259
Strand: Reverse
Name: yqjI [H]
Synonym: Sbal195_2969
Alternate gene names: 160876079
Gene position: 3527259-3525733 (Counterclockwise)
Preceding gene: 160876080
Following gene: 160876078
Centisome position: 65.96
GC content: 48.66
Gene sequence:
>1527_bases ATGCAAAACCACAGCAATCTTAATGATATCGGCGTAATTGGCCTTGGCGTTATGGGTAAAAACCTCGCGCTAAACATCGC GGATAACCAATATCACGTCAGCGCATTTGATCTCGATCCTGTTAAAGTTAATGGTGTTATACAGCAAGAAAAACAGGAAC GCGCTGGACTCGAACCTCGCATTCTTGGCTGTGCTAATCTTACCGAAATGTTAGCCAGTCTCACAAAACCCCGCATTCTT GTGCTTTCTGTTCCCGCGGGCGCACCCGTCGATGGTGTCTGTAGTGCTTTGATTTCTGCCGGAATTGAGTCAGATGATAT CGTTATCGATACCGGTAACAGCCTATGGACCGACACTGTTGAGCGTGAAGCGCGCTACAAAGGTCAGTTTGTATTTTTCA GCTCTGCGGTTTCGGGCGGTGAAGTCGGTGCGCGTTTCGGTCCATCACTTATGCCAAGCGGCGATATCGATGCATGGCAT CACGTTGCACCTATTTGGAAAGCCATTGCCGCTAAGGTTGATGCAAGTACAGGTTTACCCATAGAGCGCTTCGAACCGGG TAATCCAGTGACAGAAGGCGAGCCATGCACGACTTATATTGGTCCTGCGGGTTCTGGCCATTACGTGAAGATGGTGCACA ACGGTATTGAATATGCTGATATGCAGTTGATTTGCGAAGCCTATCAAATGCTGCATGACGGTTTAGGCATGAGCGCTGCA GAAGTGGGCGATGTGTTTGAACGCTGGAACAAAGGCAGCTTAAACAGCTATTTGATGGGGATCAGTGCCGAAGTCTTAAA ACAGGCCGATCCATTAACGGGTAAACCGTTGGTGGAAATGATCTTAGATAAAGCGGGCCAAAAAGGCACGGGTTTGTGGA CGGCCGTAAGCAGTTTACAAATTGGTTGTCCGGCACCGACGATTGCTGAAGCTGTATATGCTCGCGCCGTAAGTACCCAA AAATCCTTACGTTTACAACTTAGCCAGAAATTGGCTGGGCCAAATGCACCTGCTATCGATGATGCGCAAAAAGCGCAGTT GATTGAAGCCCTTGAAAGTGCTTTATATTGCGCGAAAGTGTGTTGTTACGCGCAAGGCTTCCAGTTGATGGCGATGACGG CCCATGAACAAAAATGGCAGTTAGACTTTGCTGAAATTGCAAAAATTTGGCGTGCGGGTTGTATTATTCGCGCGACGTTC TTGCAATCAATCACTCAAGCCTATGAAGATAATGCCGATCTTAGCAATCTGTTGATGGCCGACAGTTTTGCGTCAGCCTT ATCTGAACAGCAAGGCCTATGGCGCACTGCGGTAGCGACAGCGGTAATGCAAGGCATTCCAGCGCCGTGTATTAGCTCAG CACTGGCATATTACGACAGTTATCGCTGCGAAACATTACCAGCGAACTTGCTCCAAGGTCAGCGTGACTTTTTCGGCTCT CACACCTTCGAGCGGATCGATACCCCTGCAGGCGAGAAATATCACTTAGATTGGAGCGCTAAAGAGCGCACCTTAGCTAA GGTCTAA
Upstream 100 bases:
>100_bases TTGCCAATCGTATGTCTCTGGTAATTAAGTTACAAAGATCGGTATAATTACCCCTCAAAATTGGTTAGCTCTAACCTCTG TGACCCGTGGGAATTATATA
Downstream 100 bases:
>100_bases TGTTCGTGAAAACTCGTATATAGTATTTTATAAAGACCCTCAATATTGAGGGTTTTTTTATGCTTGCACGAAATGACAAT TAACTCATTAGCGCCAAAGA
Product: 6-phosphogluconate dehydrogenase
Products: NA
Alternate protein names: GNTZII [H]
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MQNHSNLNDIGVIGLGVMGKNLALNIADNQYHVSAFDLDPVKVNGVIQQEKQERAGLEPRILGCANLTEMLASLTKPRIL VLSVPAGAPVDGVCSALISAGIESDDIVIDTGNSLWTDTVEREARYKGQFVFFSSAVSGGEVGARFGPSLMPSGDIDAWH HVAPIWKAIAAKVDASTGLPIERFEPGNPVTEGEPCTTYIGPAGSGHYVKMVHNGIEYADMQLICEAYQMLHDGLGMSAA EVGDVFERWNKGSLNSYLMGISAEVLKQADPLTGKPLVEMILDKAGQKGTGLWTAVSSLQIGCPAPTIAEAVYARAVSTQ KSLRLQLSQKLAGPNAPAIDDAQKAQLIEALESALYCAKVCCYAQGFQLMAMTAHEQKWQLDFAEIAKIWRAGCIIRATF LQSITQAYEDNADLSNLLMADSFASALSEQQGLWRTAVATAVMQGIPAPCISSALAYYDSYRCETLPANLLQGQRDFFGS HTFERIDTPAGEKYHLDWSAKERTLAKV
Sequences:
>Translated_508_residues MQNHSNLNDIGVIGLGVMGKNLALNIADNQYHVSAFDLDPVKVNGVIQQEKQERAGLEPRILGCANLTEMLASLTKPRIL VLSVPAGAPVDGVCSALISAGIESDDIVIDTGNSLWTDTVEREARYKGQFVFFSSAVSGGEVGARFGPSLMPSGDIDAWH HVAPIWKAIAAKVDASTGLPIERFEPGNPVTEGEPCTTYIGPAGSGHYVKMVHNGIEYADMQLICEAYQMLHDGLGMSAA EVGDVFERWNKGSLNSYLMGISAEVLKQADPLTGKPLVEMILDKAGQKGTGLWTAVSSLQIGCPAPTIAEAVYARAVSTQ KSLRLQLSQKLAGPNAPAIDDAQKAQLIEALESALYCAKVCCYAQGFQLMAMTAHEQKWQLDFAEIAKIWRAGCIIRATF LQSITQAYEDNADLSNLLMADSFASALSEQQGLWRTAVATAVMQGIPAPCISSALAYYDSYRCETLPANLLQGQRDFFGS HTFERIDTPAGEKYHLDWSAKERTLAKV >Mature_508_residues MQNHSNLNDIGVIGLGVMGKNLALNIADNQYHVSAFDLDPVKVNGVIQQEKQERAGLEPRILGCANLTEMLASLTKPRIL VLSVPAGAPVDGVCSALISAGIESDDIVIDTGNSLWTDTVEREARYKGQFVFFSSAVSGGEVGARFGPSLMPSGDIDAWH HVAPIWKAIAAKVDASTGLPIERFEPGNPVTEGEPCTTYIGPAGSGHYVKMVHNGIEYADMQLICEAYQMLHDGLGMSAA EVGDVFERWNKGSLNSYLMGISAEVLKQADPLTGKPLVEMILDKAGQKGTGLWTAVSSLQIGCPAPTIAEAVYARAVSTQ KSLRLQLSQKLAGPNAPAIDDAQKAQLIEALESALYCAKVCCYAQGFQLMAMTAHEQKWQLDFAEIAKIWRAGCIIRATF LQSITQAYEDNADLSNLLMADSFASALSEQQGLWRTAVATAVMQGIPAPCISSALAYYDSYRCETLPANLLQGQRDFFGS HTFERIDTPAGEKYHLDWSAKERTLAKV
Specific function: Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH [H]
COG id: COG0362
COG function: function code G; 6-phosphogluconate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 6-phosphogluconate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI40068518, Length=499, Percent_Identity=44.0881763527054, Blast_Score=419, Evalue=1e-117, Organism=Escherichia coli, GI1788341, Length=491, Percent_Identity=44.806517311609, Blast_Score=411, Evalue=1e-116, Organism=Caenorhabditis elegans, GI17542558, Length=493, Percent_Identity=43.8133874239351, Blast_Score=410, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6321695, Length=500, Percent_Identity=45.6, Blast_Score=443, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6321977, Length=499, Percent_Identity=44.8897795591182, Blast_Score=422, Evalue=1e-119, Organism=Drosophila melanogaster, GI24639279, Length=493, Percent_Identity=44.2190669371197, Blast_Score=390, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR006114 - InterPro: IPR006113 - InterPro: IPR006115 - InterPro: IPR006184 - InterPro: IPR013328 - InterPro: IPR012284 - InterPro: IPR016040 - InterPro: IPR006183 [H]
Pfam domain/function: PF00393 6PGD; PF03446 NAD_binding_2 [H]
EC number: =1.1.1.44 [H]
Molecular weight: Translated: 54765; Mature: 54765
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: PS00461 6PGD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNHSNLNDIGVIGLGVMGKNLALNIADNQYHVSAFDLDPVKVNGVIQQEKQERAGLEPR CCCCCCCCCCCEEEECEECCCEEEEEECCEEEEEEECCCCEEECCHHHHHHHHHCCCCCE ILGCANLTEMLASLTKPRILVLSVPAGAPVDGVCSALISAGIESDDIVIDTGNSLWTDTV EECHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHH EREARYKGQFVFFSSAVSGGEVGARFGPSLMPSGDIDAWHHVAPIWKAIAAKVDASTGLP HHHHHHCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC IERFEPGNPVTEGEPCTTYIGPAGSGHYVKMVHNGIEYADMQLICEAYQMLHDGLGMSAA CCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH EVGDVFERWNKGSLNSYLMGISAEVLKQADPLTGKPLVEMILDKAGQKGTGLWTAVSSLQ HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCC IGCPAPTIAEAVYARAVSTQKSLRLQLSQKLAGPNAPAIDDAQKAQLIEALESALYCAKV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH CCYAQGFQLMAMTAHEQKWQLDFAEIAKIWRAGCIIRATFLQSITQAYEDNADLSNLLMA HHHHCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH DSFASALSEQQGLWRTAVATAVMQGIPAPCISSALAYYDSYRCETLPANLLQGQRDFFGS HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHCC HTFERIDTPAGEKYHLDWSAKERTLAKV CCHHHHCCCCCCEEEECCCCCCHHHHCC >Mature Secondary Structure MQNHSNLNDIGVIGLGVMGKNLALNIADNQYHVSAFDLDPVKVNGVIQQEKQERAGLEPR CCCCCCCCCCCEEEECEECCCEEEEEECCEEEEEEECCCCEEECCHHHHHHHHHCCCCCE ILGCANLTEMLASLTKPRILVLSVPAGAPVDGVCSALISAGIESDDIVIDTGNSLWTDTV EECHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHH EREARYKGQFVFFSSAVSGGEVGARFGPSLMPSGDIDAWHHVAPIWKAIAAKVDASTGLP HHHHHHCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC IERFEPGNPVTEGEPCTTYIGPAGSGHYVKMVHNGIEYADMQLICEAYQMLHDGLGMSAA CCCCCCCCCCCCCCCCEEEECCCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH EVGDVFERWNKGSLNSYLMGISAEVLKQADPLTGKPLVEMILDKAGQKGTGLWTAVSSLQ HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCC IGCPAPTIAEAVYARAVSTQKSLRLQLSQKLAGPNAPAIDDAQKAQLIEALESALYCAKV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH CCYAQGFQLMAMTAHEQKWQLDFAEIAKIWRAGCIIRATFLQSITQAYEDNADLSNLLMA HHHHCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH DSFASALSEQQGLWRTAVATAVMQGIPAPCISSALAYYDSYRCETLPANLLQGQRDFFGS HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHCC HTFERIDTPAGEKYHLDWSAKERTLAKV CCHHHHCCCCCCEEEECCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 10568751; 9298659 [H]