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The map label for this gene is ykgD [C]

Identifier: 160875559

GI number: 160875559

Start: 2894291

End: 2895205

Strand: Direct

Name: ykgD [C]

Synonym: Sbal195_2447

Alternate gene names: 160875559

Gene position: 2894291-2895205 (Clockwise)

Preceding gene: 160875558

Following gene: 160875560

Centisome position: 54.13

GC content: 49.07

Gene sequence:

>915_bases
ATGGTGCTTATCTTGCGGTACACGGCCGATTTATTAGAAATGCGCAGCTTTAAGCGTTTCGAGACCGAACTCGCGCACTT
AGGCTTTACGCATTTTCAACCCTTAGCGTCACTTCGCCCTTGGGTGCAGCGCTACTTTCATTTGCGCGTAGCGACTGATT
TACCGCAGAGCATTGAGCAGACATTTTATCCGGACGGCGGCACTAGCCTGCATTTCTATTTCCCAACGCCAACGCTAACT
CAAACGCTCAGCGGCGAAGAACCCCAAGTGTTGTTTCACTGTGGTCAAAGCCGACATTCCCACGCCTTTTTGCCAGGAAT
CGAGCTGCTGATAGTTCGCTTTCACCCCGGCGGCGCGTTTCATTTACTCGGCATTGAACTGCAAGATATTAAGTCTACGA
CATCAGTGACGGCTATTGATGCGACGCAATTGCAGCTAACAGGATTGGATCAACTGCTATCACAACTGGCGCAAACCAAT
CAACCAGCCCGACGCATCGCATTACTTGAGCATTGGCTATTGCAACTCAACCAGCGGCAATTTACTGCGGCCTTATCTCG
GCATGAATGCGCGAGGATTGGCTTAGTGCAGGCGAGTTTGCCAAAGCTTATTCAAACCCAAGCCAGTTTAGAGGATTTCT
ACGGACAACTGCCCCTAAGTCGTCGTCAGTTTGAACGAAGATTTAAACAAGAAACCGGATTGTCGCCAGCGCAGTTACTG
CAGTTAAACAGAGTCAAAGTCGCCCGTAACCTACTCAGTCAATCACCTAACCTCAGCCTAGTGCAAGTTGCATTCGATTG
CGGATTTTACGATCAAGCCCATCTACATCAACACTTTGTGCGAGTGACACAGCAAACGCCAGGACAATACAAAAAGCGTA
AAATGTCGCAAATCTCCAATCCTACGTCGCGCTAA

Upstream 100 bases:

>100_bases
AAGCACAGACTAACCACTCCAATCCAAGGCGAAGGCGAACAACCAACACAGGTGCAAAAATGCCTCAGTTAGATTAATTT
GAGCTTCCTTTCCTTACGTC

Downstream 100 bases:

>100_bases
CCGCTTAGATTGAAGCCTCAGCTTATAGGAGGCTTTTATGTCAGAACGTATACCACGCCAGCAAATTTATCAGCTACAAC
CCGCACTCGCCAACGCACTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFQPLASLRPWVQRYFHLRVATDLPQSIEQTFYPDGGTSLHFYFPTPTLT
QTLSGEEPQVLFHCGQSRHSHAFLPGIELLIVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTN
QPARRIALLEHWLLQLNQRQFTAALSRHECARIGLVQASLPKLIQTQASLEDFYGQLPLSRRQFERRFKQETGLSPAQLL
QLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR

Sequences:

>Translated_304_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFQPLASLRPWVQRYFHLRVATDLPQSIEQTFYPDGGTSLHFYFPTPTLT
QTLSGEEPQVLFHCGQSRHSHAFLPGIELLIVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTN
QPARRIALLEHWLLQLNQRQFTAALSRHECARIGLVQASLPKLIQTQASLEDFYGQLPLSRRQFERRFKQETGLSPAQLL
QLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR
>Mature_304_residues
MVLILRYTADLLEMRSFKRFETELAHLGFTHFQPLASLRPWVQRYFHLRVATDLPQSIEQTFYPDGGTSLHFYFPTPTLT
QTLSGEEPQVLFHCGQSRHSHAFLPGIELLIVRFHPGGAFHLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTN
QPARRIALLEHWLLQLNQRQFTAALSRHECARIGLVQASLPKLIQTQASLEDFYGQLPLSRRQFERRFKQETGLSPAQLL
QLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISNPTSR

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34777; Mature: 34777

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLILRYTADLLEMRSFKRFETELAHLGFTHFQPLASLRPWVQRYFHLRVATDLPQSIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
TFYPDGGTSLHFYFPTPTLTQTLSGEEPQVLFHCGQSRHSHAFLPGIELLIVRFHPGGAF
HCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEECCCCCCCCEECCCEEEEEEEECCCCEE
HLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTNQPARRIALLEHWLLQLNQRQ
EEEEEEHHHHCCCCCEEEEECCCEEHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FTAALSRHECARIGLVQASLPKLIQTQASLEDFYGQLPLSRRQFERRFKQETGLSPAQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
QLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISN
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PTSR
CCCC
>Mature Secondary Structure
MVLILRYTADLLEMRSFKRFETELAHLGFTHFQPLASLRPWVQRYFHLRVATDLPQSIEQ
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
TFYPDGGTSLHFYFPTPTLTQTLSGEEPQVLFHCGQSRHSHAFLPGIELLIVRFHPGGAF
HCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEECCCCCCCCEECCCEEEEEEEECCCCEE
HLLGIELQDIKSTTSVTAIDATQLQLTGLDQLLSQLAQTNQPARRIALLEHWLLQLNQRQ
EEEEEEHHHHCCCCCEEEEECCCEEHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FTAALSRHECARIGLVQASLPKLIQTQASLEDFYGQLPLSRRQFERRFKQETGLSPAQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
QLNRVKVARNLLSQSPNLSLVQVAFDCGFYDQAHLHQHFVRVTQQTPGQYKKRKMSQISN
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
PTSR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA