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The map label for this gene is yqfA [H]

Identifier: 160875553

GI number: 160875553

Start: 2888170

End: 2888853

Strand: Direct

Name: yqfA [H]

Synonym: Sbal195_2441

Alternate gene names: 160875553

Gene position: 2888170-2888853 (Clockwise)

Preceding gene: 160875543

Following gene: 160875557

Centisome position: 54.01

GC content: 42.84

Gene sequence:

>684_bases
ATGTCGAGTCAAAGTGTTATCGAACAACAAAACCCAGCTAAAAACCCTGCTAAGCCTGGGCCGTATAGTATTAAAGAAGA
AATCGCTAATAGCGTATCCCATGGCTTAGGCGTCATCGCAGGCATAGTGGCATTGGTACTGATGTTACTCAAAGGGCAAG
ATCATCTAACGCCAATTCAACTAACAGGCGTTGCCATTTATGGTGCGAGCATCATTGTGCTTTTTCTATGCTCGACCTTA
TACCACAGCGTTAGCCATTCAGGCTGGAAACATAAACTTAAGATCGCCGATCACTGCGCAATTTACTGTTTGATTGCAGG
AACTTACACACCTTTGATGCTGATAAGCCTACAGGGGACGCAATCGATAGTGATTTTAACGGCGATTTGGTCGCTTGCGA
TTGGTGGGATCCTATTTAAGACGCTATTTATTCACAAATTCAAAATGTTAAGCTTAGTCTTGTATCTCGCCATGGGTTGG
CTATGTGTCACTGTGATGGGCGATTTAACGGCGGCCATGTCGGAGTTAGGTTTTAATCTATTGATCTTAGGCGGATTATT
TTACACTTTAGGTGTTGTGTTCTACGTCGGGAAACGTATTCCATTTAACCATGCCATTTGGCATTTGTTTGTGCTTGGCG
GTGCCATGAGTCACTTTCTGTGTATTTATCTGACTGTTATTTAA

Upstream 100 bases:

>100_bases
CCAGTCATATATTTAAGCTTACAAGTGTACGCTTAAATATGGTGATTTATTTTTCTAACTGATAGACTCAGACATTATCG
TTTGCGAGTGTGTATCTACT

Downstream 100 bases:

>100_bases
ATGGCTATGATTTACCTGATGGTGATTTAACTGGCTATAATTTAAATGATTATGACTTAACAGATGGTGATTTAACTGAC
GGTGATTTATCTGTGAGTCA

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSSQSVIEQQNPAKNPAKPGPYSIKEEIANSVSHGLGVIAGIVALVLMLLKGQDHLTPIQLTGVAIYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKMLSLVLYLAMGW
LCVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI

Sequences:

>Translated_227_residues
MSSQSVIEQQNPAKNPAKPGPYSIKEEIANSVSHGLGVIAGIVALVLMLLKGQDHLTPIQLTGVAIYGASIIVLFLCSTL
YHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKMLSLVLYLAMGW
LCVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
>Mature_226_residues
SSQSVIEQQNPAKNPAKPGPYSIKEEIANSVSHGLGVIAGIVALVLMLLKGQDHLTPIQLTGVAIYGASIIVLFLCSTLY
HSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGTQSIVILTAIWSLAIGGILFKTLFIHKFKMLSLVLYLAMGWL
CVTVMGDLTAAMSELGFNLLILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI52630445, Length=232, Percent_Identity=34.4827586206897, Blast_Score=103, Evalue=9e-23,
Organism=Homo sapiens, GI154759275, Length=225, Percent_Identity=31.1111111111111, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI154759277, Length=250, Percent_Identity=28.4, Blast_Score=88, Evalue=7e-18,
Organism=Escherichia coli, GI1789266, Length=214, Percent_Identity=52.3364485981308, Blast_Score=214, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI71996356, Length=210, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24640324, Length=239, Percent_Identity=31.3807531380753, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24677; Mature: 24546

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQSVIEQQNPAKNPAKPGPYSIKEEIANSVSHGLGVIAGIVALVLMLLKGQDHLTPIQ
CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LTGVAIYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKMLSLVLYLAMGWLCVTVMGDLTAAMSELGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSQSVIEQQNPAKNPAKPGPYSIKEEIANSVSHGLGVIAGIVALVLMLLKGQDHLTPIQ
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LTGVAIYGASIIVLFLCSTLYHSVSHSGWKHKLKIADHCAIYCLIAGTYTPLMLISLQGT
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
QSIVILTAIWSLAIGGILFKTLFIHKFKMLSLVLYLAMGWLCVTVMGDLTAAMSELGFNL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LILGGLFYTLGVVFYVGKRIPFNHAIWHLFVLGGAMSHFLCIYLTVI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]