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The map label for this gene is ygcF [H]

Identifier: 160875275

GI number: 160875275

Start: 2569070

End: 2569738

Strand: Direct

Name: ygcF [H]

Synonym: Sbal195_2162

Alternate gene names: 160875275

Gene position: 2569070-2569738 (Clockwise)

Preceding gene: 160875272

Following gene: 160875277

Centisome position: 48.04

GC content: 47.53

Gene sequence:

>669_bases
ATGAACTACCCAGTCAACGAAGTATTTGAAACCATTCAAGGTGAAGGTGTCTTTACCGGAGTGCCCGCCATATTTGTCCG
CCTGCAAGGTTGTCCCGTGGGATGTGCTTGGTGCGATACGAAACAGACATGGGATGTACTTGAAGTGAATAAAGTGACGC
CAGAGCAAGTGATTACCGTAGACGGCACTATTGGTCGCTGGGCAGATCATACGGCGCAAAGTCTTATCGCTGCTTTTCAT
GCCAAAGGTTTCACTGCGCGCCATATAGTGATCACCGGCGGTGAGCCTTGTATGTACGATTTACGCGAATTAACTGAAAC
CTTGCACAGCCAAGGCTTTGCCACCCAAATCGAAACCAGTGGCACCTTCGACATCAATTGTGCCGATGATACTTGGGTGA
CGGTATCGCCCAAGGTGAACATGAAAGGTGGTTATAAGGTATTAGCGCAGGCGCTGAATCGTGCCAATGAGATTAAGCAT
CCTATCGCCACTGAAAATCACATCGCTGAATTGGATGAGTTACTGCAAGGCATCGATATTTCCACGAAAACGATTTGCCT
GCAGCCGATTAGCCAAAAGCCCAGAGCGACTGAACTGGCGATGAAGGTGTGTATTGCCCGTAATTGGCGTTTATCGATCC
AAACCCATAAGTATTTGAATATTGATTAA

Upstream 100 bases:

>100_bases
ACTCTGGCGATCTGCATCAAATAGGCTTTCTCGGCGCAAAAACTTGCAGCTCAAGCTAAAATCCACTATAAATGCCGCCC
CAGAAAAGTGGAACGCCAGC

Downstream 100 bases:

>100_bases
TGCTCTTGGGTTACTCTACCAACGATAAAAAACGCCTCACAACTGTGGGGCGTTTTTTATGGCTGACGTTTAGCGGTGGA
CTTTAAAACCGTCAACTCAA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVTPEQVITVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATENHIAELDELLQGIDISTKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Sequences:

>Translated_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVTPEQVITVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATENHIAELDELLQGIDISTKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
>Mature_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVTPEQVITVDGTIGRWADHTAQSLIAAFH
AKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIETSGTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKH
PIATENHIAELDELLQGIDISTKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=59.009009009009, Blast_Score=283, Evalue=6e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24626; Mature: 24626

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVTPEQVITV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCEEEE
DGTIGRWADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIETS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIAELDELLQGIDI
CEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
STKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC
>Mature Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDVLEVNKVTPEQVITV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCEEEE
DGTIGRWADHTAQSLIAAFHAKGFTARHIVITGGEPCMYDLRELTETLHSQGFATQIETS
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTFDINCADDTWVTVSPKVNMKGGYKVLAQALNRANEIKHPIATENHIAELDELLQGIDI
CEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC
STKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]