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The map label for this gene is rtn [H]

Identifier: 160875212

GI number: 160875212

Start: 2507494

End: 2508198

Strand: Reverse

Name: rtn [H]

Synonym: Sbal195_2099

Alternate gene names: 160875212

Gene position: 2508198-2507494 (Counterclockwise)

Preceding gene: 160875213

Following gene: 160875211

Centisome position: 46.91

GC content: 47.23

Gene sequence:

>705_bases
ATGATTAACCTTAGTTCGTTAACGCTCAGCTGCGAATACCAACCCTTTGTCGATCCCCATACGTTAGCCATCGACGGCTA
TGAAGCCTTAGCGCGTTTTTATCTACCTGATGGCGATGCGGTTGCACCTAATATCGTGTTCGAGCAATTGCATGAATCCA
CAGAATTACTCGCCGCCGTTGAATATCAAGCCAAAGCATTTCAACTCGCTCACGCGCCCAGCCAGCAGCGCATTTTTATC
AATGTCGATCCCCATGCTGTCGATGGGCCACATACTGCCAAGCTTATAAAGCTATTATCGCAGTACCAGCAAGTCACGGT
CGAAATCATTGAAAATACCTGCATTAACGATGCCCAGCTTGCCAATCAGCTATTCAGCCAATTTAAACAAGCAAATATCA
AGGTAGCGCTGGACGATATTGGCGCGCCCCACTCCATGCTTTGTGTCGATTTGATGATGAATGTGGATTATCTCAAGTTA
GATCGTCATTGGTTAACCCACATCACGCATCCCGAGGGAGTCCAATTACTCATAGCGCTGATTAACTTTGCCAAGCAAAC
CAACAAACAGTGCATTCTAGAAGGCATAGAAACCGAAGCCCACTTGGCGTTTGCGCGAGACATAGGCGTCGACTTAGTCC
AAGGCTTTCTGTTTAAATCTTGGTTTATTCGCCCCACCCGCAGTCAAGCGCTGTGTCTTGCATAG

Upstream 100 bases:

>100_bases
ATTATTCAGCAATCACGCCGTTTTATCGTAAACTTGTTTGCACTGCGAGGCATTAAATGCGAATAATTAGTATTAATGCA
TTAAGACTCCCATTAGGCCC

Downstream 100 bases:

>100_bases
ATCCACGCGTCGCCCTTTGACTTTGCGCCACCAGCACACGCAAGCCTAAACGTCATTCAGTCGAGTAATTGATTTCGCAC
TAGAAATGCCACTGGATAAG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MINLSSLTLSCEYQPFVDPHTLAIDGYEALARFYLPDGDAVAPNIVFEQLHESTELLAAVEYQAKAFQLAHAPSQQRIFI
NVDPHAVDGPHTAKLIKLLSQYQQVTVEIIENTCINDAQLANQLFSQFKQANIKVALDDIGAPHSMLCVDLMMNVDYLKL
DRHWLTHITHPEGVQLLIALINFAKQTNKQCILEGIETEAHLAFARDIGVDLVQGFLFKSWFIRPTRSQALCLA

Sequences:

>Translated_234_residues
MINLSSLTLSCEYQPFVDPHTLAIDGYEALARFYLPDGDAVAPNIVFEQLHESTELLAAVEYQAKAFQLAHAPSQQRIFI
NVDPHAVDGPHTAKLIKLLSQYQQVTVEIIENTCINDAQLANQLFSQFKQANIKVALDDIGAPHSMLCVDLMMNVDYLKL
DRHWLTHITHPEGVQLLIALINFAKQTNKQCILEGIETEAHLAFARDIGVDLVQGFLFKSWFIRPTRSQALCLA
>Mature_234_residues
MINLSSLTLSCEYQPFVDPHTLAIDGYEALARFYLPDGDAVAPNIVFEQLHESTELLAAVEYQAKAFQLAHAPSQQRIFI
NVDPHAVDGPHTAKLIKLLSQYQQVTVEIIENTCINDAQLANQLFSQFKQANIKVALDDIGAPHSMLCVDLMMNVDYLKL
DRHWLTHITHPEGVQLLIALINFAKQTNKQCILEGIETEAHLAFARDIGVDLVQGFLFKSWFIRPTRSQALCLA

Specific function: Involved in resistance to phages N4 and lambda [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1788502, Length=226, Percent_Identity=30.0884955752212, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI226510982, Length=227, Percent_Identity=27.7533039647577, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081743, Length=217, Percent_Identity=26.7281105990783, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790496, Length=227, Percent_Identity=27.3127753303965, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787541, Length=119, Percent_Identity=33.6134453781513, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081980, Length=218, Percent_Identity=25.2293577981651, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 26253; Mature: 26253

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLSSLTLSCEYQPFVDPHTLAIDGYEALARFYLPDGDAVAPNIVFEQLHESTELLAAV
CCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
EYQAKAFQLAHAPSQQRIFINVDPHAVDGPHTAKLIKLLSQYQQVTVEIIENTCINDAQL
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ANQLFSQFKQANIKVALDDIGAPHSMLCVDLMMNVDYLKLDRHWLTHITHPEGVQLLIAL
HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHH
INFAKQTNKQCILEGIETEAHLAFARDIGVDLVQGFLFKSWFIRPTRSQALCLA
HHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
>Mature Secondary Structure
MINLSSLTLSCEYQPFVDPHTLAIDGYEALARFYLPDGDAVAPNIVFEQLHESTELLAAV
CCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
EYQAKAFQLAHAPSQQRIFINVDPHAVDGPHTAKLIKLLSQYQQVTVEIIENTCINDAQL
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ANQLFSQFKQANIKVALDDIGAPHSMLCVDLMMNVDYLKLDRHWLTHITHPEGVQLLIAL
HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHH
INFAKQTNKQCILEGIETEAHLAFARDIGVDLVQGFLFKSWFIRPTRSQALCLA
HHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 9079933 [H]