| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160875104
Identifier: 160875104
GI number: 160875104
Start: 2374896
End: 2377109
Strand: Direct
Name: 160875104
Synonym: Sbal195_1989
Alternate gene names: NA
Gene position: 2374896-2377109 (Clockwise)
Preceding gene: 160875103
Following gene: 160875105
Centisome position: 44.41
GC content: 42.68
Gene sequence:
>2214_bases ATGCAATCGTTTAACTATCCATTATCTCTAGTTACGTTATTTGCGCTGTCCTATGCCGCCCAAGGATTTGCAAATACTCA AGTCGATAAGGACGCTTACCTTATTATTGGTGGTGGCACCATCATCAGTATGCAAGCGGGCATGAAAGGAGCTAAAAAAC CTGATAAATACATTTATAACGAGGACTATTCTTTGCTGGTTAAAGGCAATGTCATTGAGTCTATCGCAAAAAATGCTGAT ATTAAGGCCATGGTGCCAAAAGGCAAAAAAGTCGATTATTTAAATCTGAAAGGGCAAACCTTGTTACCTGGTTTTATTGA GCCCCACGCCCATTTGCAGCTCACGGTAGCAGGGGCGAAATTTACCAATTTAATGCCGTGTTTACCGGATAAATATCAAA AAACGTATTATCAAGACTATCAGTGGCTCTACAACACCGGTAAGAAAGACAAGAAAGATAACTGCCTACTTTATATTGAT AAGGCAATTAACACCCTAGCGAACAGTACTGCTATCGATGGCTGGCTCATAGGTAATGGTATGGATCCCTCTAGAATGTT GTTGACTGAAAAAGCCGCTGGCCTTAATGCCAATAAAGATTTTTTACATTATCCCGCCAGTTATTTCATTAAATATAATC CTGATGCATTTTCAGCATCACCGGCGTTTATTCTCGACCAATCCGGCCATTTAGGCTATGTCAATGAACAAGCTTTTATA GCATCAGGCATTTGTGGGAAAACCTTTGATATCAGCAAAAAAGCCTATATGGAAAAAACCGGGATCTCTACACTCAGTTC TGAGGATGACACGTTTTTTAACCAATATTTAGGGCATGAAATTGTGTGTCAAGGCAGCGCAAAAGAGATGGTGTTGTCAC AAAAAATGGCTGCCTATCAGTTTGGCTTTCCTGATGGTGAGTGGGGCATAGTTGAGACTAAACCTGGCAGTGGCGAATGG GTCTTTTCAGGTTTATTAAAAGAAGAATCCTCATTCTATCCCTTACTTGGGCCACTGATTAACTGGTTTGCTAAAGCCCC AGTGGATACCAAAGCACGCTTTTCTGAGCAAATGGAGCAAGACATGCTCAAAGTGCTCAATATTGCCTCGCAACAAGGGG TAACGACATTTGCTGAAGGTGGTGGTTCAAGCCAGGCACTCATAGAGAGTTATCAGCGTATTGCTAGCCGTAGTGACATG CCAACACGCCTGCGTACCTTATACACTTGGGATGCTAAATGGGATGAAAAGTCTTTAGATAAAAATCAGTTACCACAGAA AGTCTCTTTTGATAGCGGCTTGTTTTCCGCTGAAGGGGTGAAGTTATGGGCAGATGGTTCAACCCAAGGTTGTAGCGCTT ATCTTGGGCAAGATTACGACGAAAAGGGGTTGTGCAGTGACTATGACAGAGGTCATCAAAACTATGACAAGCAAGCCATG GAGGCGCGTTTAAAAAAATATGCTGAAAACAACTGGTATGTTCACATTCACGCTAATGGCAACAGCGCCATTAACAACGC CATTGATGCCTTAAATTCTCTTGGCAAGACATATCCTTCATTTAAAGCATTGCCCAGTGTGCTAATACATTCAACCGTAA ATGGTGACAGCGAAGATCCCCTCACTATCCCCGAAAAAATTGCTGCGCTGAGAAATAAAGACGACTTGCCTAATTTATCC ACTAGCCACCTTATTGGCCATGTGGCTTATTGGGGAGCATCTTTAGTTAACTCGCTCGGTGAAAAAAGGGCACAACACAT AGATCCCACACAAACCGAGTGGCAAAAAGGCATACCTTTGTCACTACATAGTGACATGGCAGTAAGCCCCTTATACCCTT TATGGTTTGTTGAGCAAGCGGTGAGTCGCAATACTTGGGCTTATCCAAAGTTGTCTGGCGAGGGTAAACCTCTCAACAAT ATTGATGAAGCACTTACGCCATACCAAGCACTCTTGGCTGTGACGTTACACCCAGCGATGCAACACAATATAGGTGATAA ACTGGGGTCATTAGAGAAAGGTAAGTTGGCCGATATGGTTGTACTTGCCAAAAATCCATTAACCTTAGCCAAGCCCACAG AAATTCATAATATTGCGGTCTCTTGTACTTTCCTAAATGGTAAGCAAGTCATTTGGAAGTACCCCGAGTCAAACGCTGTG CGCCCAACACCAAACTGTAACATTATAAAAGATCACAATATGGCGACCTGGTAG
Upstream 100 bases:
>100_bases GTGGCTTCATTAGCCAACTGCGTACTTAGGTGTAAAGCTTTAGTTTATACACAGCGCCAAGGCGTGTCCTTAAGGAAGAT ACTATATTGAAGGGATCTAT
Downstream 100 bases:
>100_bases CCTTAAACCTTAAAAGCTGGAGGGGATAAGTGCCCCTTCTTTTATCAATTATGGTCAACTGAATTTGGCCACGACCTTAG AGATTAAAATTCATAATATT
Product: amidohydrolase 3
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Amidohydrolase Family; Twin-Arginine Translocation Pathway Signal; Amidohydrolase Domain Protein; Metal-Dependent Amidohydrolase; Amidohydrolase-Like; Amidohydrolase Domain-Containing Protein; Lipoprotein; Amidase; Amidohydrolase; Exo Regulatory Protein AepA; Hydrolase; Amidohydrolase Metallo-Dependent Hydrolase Domain; Metal Dependent Amidohydrolase; Exo Regulatory Protein; AmidohydrolaseAmidohydrolase-Like; Periplasmic Metal-Dependent Aminohydolase Protein; Exos Regulatory Protein AepA; Metal-Dependant Glycoprotease; Twin-Arginine Translocation Pathway Signal Protein; Metal-Dependent Hydrolases
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MQSFNYPLSLVTLFALSYAAQGFANTQVDKDAYLIIGGGTIISMQAGMKGAKKPDKYIYNEDYSLLVKGNVIESIAKNAD IKAMVPKGKKVDYLNLKGQTLLPGFIEPHAHLQLTVAGAKFTNLMPCLPDKYQKTYYQDYQWLYNTGKKDKKDNCLLYID KAINTLANSTAIDGWLIGNGMDPSRMLLTEKAAGLNANKDFLHYPASYFIKYNPDAFSASPAFILDQSGHLGYVNEQAFI ASGICGKTFDISKKAYMEKTGISTLSSEDDTFFNQYLGHEIVCQGSAKEMVLSQKMAAYQFGFPDGEWGIVETKPGSGEW VFSGLLKEESSFYPLLGPLINWFAKAPVDTKARFSEQMEQDMLKVLNIASQQGVTTFAEGGGSSQALIESYQRIASRSDM PTRLRTLYTWDAKWDEKSLDKNQLPQKVSFDSGLFSAEGVKLWADGSTQGCSAYLGQDYDEKGLCSDYDRGHQNYDKQAM EARLKKYAENNWYVHIHANGNSAINNAIDALNSLGKTYPSFKALPSVLIHSTVNGDSEDPLTIPEKIAALRNKDDLPNLS TSHLIGHVAYWGASLVNSLGEKRAQHIDPTQTEWQKGIPLSLHSDMAVSPLYPLWFVEQAVSRNTWAYPKLSGEGKPLNN IDEALTPYQALLAVTLHPAMQHNIGDKLGSLEKGKLADMVVLAKNPLTLAKPTEIHNIAVSCTFLNGKQVIWKYPESNAV RPTPNCNIIKDHNMATW
Sequences:
>Translated_737_residues MQSFNYPLSLVTLFALSYAAQGFANTQVDKDAYLIIGGGTIISMQAGMKGAKKPDKYIYNEDYSLLVKGNVIESIAKNAD IKAMVPKGKKVDYLNLKGQTLLPGFIEPHAHLQLTVAGAKFTNLMPCLPDKYQKTYYQDYQWLYNTGKKDKKDNCLLYID KAINTLANSTAIDGWLIGNGMDPSRMLLTEKAAGLNANKDFLHYPASYFIKYNPDAFSASPAFILDQSGHLGYVNEQAFI ASGICGKTFDISKKAYMEKTGISTLSSEDDTFFNQYLGHEIVCQGSAKEMVLSQKMAAYQFGFPDGEWGIVETKPGSGEW VFSGLLKEESSFYPLLGPLINWFAKAPVDTKARFSEQMEQDMLKVLNIASQQGVTTFAEGGGSSQALIESYQRIASRSDM PTRLRTLYTWDAKWDEKSLDKNQLPQKVSFDSGLFSAEGVKLWADGSTQGCSAYLGQDYDEKGLCSDYDRGHQNYDKQAM EARLKKYAENNWYVHIHANGNSAINNAIDALNSLGKTYPSFKALPSVLIHSTVNGDSEDPLTIPEKIAALRNKDDLPNLS TSHLIGHVAYWGASLVNSLGEKRAQHIDPTQTEWQKGIPLSLHSDMAVSPLYPLWFVEQAVSRNTWAYPKLSGEGKPLNN IDEALTPYQALLAVTLHPAMQHNIGDKLGSLEKGKLADMVVLAKNPLTLAKPTEIHNIAVSCTFLNGKQVIWKYPESNAV RPTPNCNIIKDHNMATW >Mature_737_residues MQSFNYPLSLVTLFALSYAAQGFANTQVDKDAYLIIGGGTIISMQAGMKGAKKPDKYIYNEDYSLLVKGNVIESIAKNAD IKAMVPKGKKVDYLNLKGQTLLPGFIEPHAHLQLTVAGAKFTNLMPCLPDKYQKTYYQDYQWLYNTGKKDKKDNCLLYID KAINTLANSTAIDGWLIGNGMDPSRMLLTEKAAGLNANKDFLHYPASYFIKYNPDAFSASPAFILDQSGHLGYVNEQAFI ASGICGKTFDISKKAYMEKTGISTLSSEDDTFFNQYLGHEIVCQGSAKEMVLSQKMAAYQFGFPDGEWGIVETKPGSGEW VFSGLLKEESSFYPLLGPLINWFAKAPVDTKARFSEQMEQDMLKVLNIASQQGVTTFAEGGGSSQALIESYQRIASRSDM PTRLRTLYTWDAKWDEKSLDKNQLPQKVSFDSGLFSAEGVKLWADGSTQGCSAYLGQDYDEKGLCSDYDRGHQNYDKQAM EARLKKYAENNWYVHIHANGNSAINNAIDALNSLGKTYPSFKALPSVLIHSTVNGDSEDPLTIPEKIAALRNKDDLPNLS TSHLIGHVAYWGASLVNSLGEKRAQHIDPTQTEWQKGIPLSLHSDMAVSPLYPLWFVEQAVSRNTWAYPKLSGEGKPLNN IDEALTPYQALLAVTLHPAMQHNIGDKLGSLEKGKLADMVVLAKNPLTLAKPTEIHNIAVSCTFLNGKQVIWKYPESNAV RPTPNCNIIKDHNMATW
Specific function: Unknown
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81629; Mature: 81629
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSFNYPLSLVTLFALSYAAQGFANTQVDKDAYLIIGGGTIISMQAGMKGAKKPDKYIYN CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEC EDYSLLVKGNVIESIAKNADIKAMVPKGKKVDYLNLKGQTLLPGFIEPHAHLQLTVAGAK CCCEEEEECHHHHHHHCCCCEEEECCCCCCEEEEECCCCEECCCCCCCCCEEEEEEECCH FTNLMPCLPDKYQKTYYQDYQWLYNTGKKDKKDNCLLYIDKAINTLANSTAIDGWLIGNG HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEECCC MDPSRMLLTEKAAGLNANKDFLHYPASYFIKYNPDAFSASPAFILDQSGHLGYVNEQAFI CCHHHHHHHHHHCCCCCCCCCEECCCEEEEEECCCCCCCCCCEEEECCCCCEEECCCHHE ASGICGKTFDISKKAYMEKTGISTLSSEDDTFFNQYLGHEIVCQGSAKEMVLSQKMAAYQ ECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHC FGFPDGEWGIVETKPGSGEWVFSGLLKEESSFYPLLGPLINWFAKAPVDTKARFSEQMEQ CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH DMLKVLNIASQQGVTTFAEGGGSSQALIESYQRIASRSDMPTRLRTLYTWDAKWDEKSLD HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC KNQLPQKVSFDSGLFSAEGVKLWADGSTQGCSAYLGQDYDEKGLCSDYDRGHQNYDKQAM HHHCCCEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHCCCCCHHHHHH EARLKKYAENNWYVHIHANGNSAINNAIDALNSLGKTYPSFKALPSVLIHSTVNGDSEDP HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC LTIPEKIAALRNKDDLPNLSTSHLIGHVAYWGASLVNSLGEKRAQHIDPTQTEWQKGIPL CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCE SLHSDMAVSPLYPLWFVEQAVSRNTWAYPKLSGEGKPLNNIDEALTPYQALLAVTLHPAM EECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QHNIGDKLGSLEKGKLADMVVLAKNPLTLAKPTEIHNIAVSCTFLNGKQVIWKYPESNAV HHHHHHHHCCCCCCCCEEEEEEECCCCEECCCCCEEEEEEEEEEECCCEEEEECCCCCCC RPTPNCNIIKDHNMATW CCCCCCCEEECCCCCCC >Mature Secondary Structure MQSFNYPLSLVTLFALSYAAQGFANTQVDKDAYLIIGGGTIISMQAGMKGAKKPDKYIYN CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEC EDYSLLVKGNVIESIAKNADIKAMVPKGKKVDYLNLKGQTLLPGFIEPHAHLQLTVAGAK CCCEEEEECHHHHHHHCCCCEEEECCCCCCEEEEECCCCEECCCCCCCCCEEEEEEECCH FTNLMPCLPDKYQKTYYQDYQWLYNTGKKDKKDNCLLYIDKAINTLANSTAIDGWLIGNG HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCCCCCCEEECCC MDPSRMLLTEKAAGLNANKDFLHYPASYFIKYNPDAFSASPAFILDQSGHLGYVNEQAFI CCHHHHHHHHHHCCCCCCCCCEECCCEEEEEECCCCCCCCCCEEEECCCCCEEECCCHHE ASGICGKTFDISKKAYMEKTGISTLSSEDDTFFNQYLGHEIVCQGSAKEMVLSQKMAAYQ ECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHC FGFPDGEWGIVETKPGSGEWVFSGLLKEESSFYPLLGPLINWFAKAPVDTKARFSEQMEQ CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH DMLKVLNIASQQGVTTFAEGGGSSQALIESYQRIASRSDMPTRLRTLYTWDAKWDEKSLD HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC KNQLPQKVSFDSGLFSAEGVKLWADGSTQGCSAYLGQDYDEKGLCSDYDRGHQNYDKQAM HHHCCCEECCCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHCCCCCHHHHHH EARLKKYAENNWYVHIHANGNSAINNAIDALNSLGKTYPSFKALPSVLIHSTVNGDSEDP HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC LTIPEKIAALRNKDDLPNLSTSHLIGHVAYWGASLVNSLGEKRAQHIDPTQTEWQKGIPL CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCE SLHSDMAVSPLYPLWFVEQAVSRNTWAYPKLSGEGKPLNNIDEALTPYQALLAVTLHPAM EECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH QHNIGDKLGSLEKGKLADMVVLAKNPLTLAKPTEIHNIAVSCTFLNGKQVIWKYPESNAV HHHHHHHHCCCCCCCCEEEEEEECCCCEECCCCCEEEEEEEEEEECCCEEEEECCCCCCC RPTPNCNIIKDHNMATW CCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA