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The map label for this gene is intR [H]

Identifier: 160875073

GI number: 160875073

Start: 2343174

End: 2344469

Strand: Reverse

Name: intR [H]

Synonym: Sbal195_1958

Alternate gene names: 160875073

Gene position: 2344469-2343174 (Counterclockwise)

Preceding gene: 160875074

Following gene: 160875070

Centisome position: 43.84

GC content: 41.05

Gene sequence:

>1296_bases
ATGAGCAATTTACCAAAGGGAGTTGAAAAACTCCCTGTTGGGGTTGAAATCAATTTTAATACCGTTCGTATAGTATTTAT
GTTCAATGGCAAGCGCTACAGAGAACCATTAAAGGGTTACTCAAAGATTACAAAGTCAGTCATTAAATATGCCGAAAATA
AGCGAAATACTATCCTAACTGAAATTGCTGAAAATCGATTCGACTACATAGCACACTTCCCTGAATCGATTAAAGCGATG
GAATTTGCAGGTATTTTAATTGAGCGCCGTAACGTTGCAAATGGTGTAAACCACTGGCTGAAAATTCAAGATGTGACCAA
AGCAAAGAGCACATCAAAAAACTATCGTAGTAAGTCGAAGCACGTTATTAACTATTTTGGGGGTGATCAGCTAATTTCTG
AAATTAGTCGAAGTCACCTACTGATGTTTCAAGCAAACATGCTTAAAGCAGGCCTTTCTCCAAAGACAGTTAATGATGTG
TTCACGATTGTTCGTGGTGTTTGGTATGTTGCATTTGAAGATGGGATCATCAGATCTAATCCGCTCGATAGAATAAGTAA
CATTGAGCGCGATACACTTGAAGAAACTGCAGACCCATTTACTCGTGACGAACTTGAAAGAATTGCGGCAGACGATACAA
GTCGCCGCGGTGACATCAATATGATCATGTTCTGCTGCTGGACAGGTCTGTCATTATCAGAGGTGATTGCGCTTGCATGG
GAGGATATTGATACCGTTAATTGGACAGTAAACATTCGACGGGCCAGAGTGCTAACTCAATACAAAGTCCCAAAAGAACG
TGGGCGAGTAAGAGTTATTGAGCTTATCGATCCAGCAAAAGAATGGCTTATTGAGCAGATGCAGCACACGATGATGCTTC
CAACTATCGAATTAGAAGTGAAGCAACGCGACAATATCACCACCAAAAATGAAAATATTCGGTTTGTATTTTTAAACGGT
AAGAGCGGATTACCTTGGTATGATCATTCGGTTCGTCGTTGGTTTACTGGCATTTTAGAACGCACCAAGTTACGCCATCG
TGGACCGAATCAATGTCGCCACACCTTTGCAAGTCAGCTGCTTTCTAACTACGTACCACTTGAATGGGTTGCAAGACAAT
TAGGCCATAGTGATACCACAATGATTAAAAAACATTATGGCAAATGGATACCTAAGGACTCGCAAAAAATGGCTAATCGA
GTGTCAGAAATGCTTGGTTTTACCAAGGACACAGAAGGAGAACAAAACGGCGATTTTGCCCAGCTTTTGCCCAGATGCAA
CAAGGGGAATCAGTAA

Upstream 100 bases:

>100_bases
GAGGCGTTTGGTTGGAAGGTAGGCAATGGCGCTATGACCCTATTGGTCGCATTGTTTACAACATCAATGAAATTGAACAG
TGGATGGAAGGAGCCGCTTA

Downstream 100 bases:

>100_bases
GATACTGATTCCCCTTGCTTTAATTTGGCGGTGAGAGAGGGAGTCGAACCCTCGATACGTTACCGTATACACACTTTCCA
GGCGTGCTCCTTCGGCCACT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MSNLPKGVEKLPVGVEINFNTVRIVFMFNGKRYREPLKGYSKITKSVIKYAENKRNTILTEIAENRFDYIAHFPESIKAM
EFAGILIERRNVANGVNHWLKIQDVTKAKSTSKNYRSKSKHVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDV
FTIVRGVWYVAFEDGIIRSNPLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCWTGLSLSEVIALAW
EDIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQMQHTMMLPTIELEVKQRDNITTKNENIRFVFLNG
KSGLPWYDHSVRRWFTGILERTKLRHRGPNQCRHTFASQLLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANR
VSEMLGFTKDTEGEQNGDFAQLLPRCNKGNQ

Sequences:

>Translated_431_residues
MSNLPKGVEKLPVGVEINFNTVRIVFMFNGKRYREPLKGYSKITKSVIKYAENKRNTILTEIAENRFDYIAHFPESIKAM
EFAGILIERRNVANGVNHWLKIQDVTKAKSTSKNYRSKSKHVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDV
FTIVRGVWYVAFEDGIIRSNPLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCWTGLSLSEVIALAW
EDIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQMQHTMMLPTIELEVKQRDNITTKNENIRFVFLNG
KSGLPWYDHSVRRWFTGILERTKLRHRGPNQCRHTFASQLLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANR
VSEMLGFTKDTEGEQNGDFAQLLPRCNKGNQ
>Mature_430_residues
SNLPKGVEKLPVGVEINFNTVRIVFMFNGKRYREPLKGYSKITKSVIKYAENKRNTILTEIAENRFDYIAHFPESIKAME
FAGILIERRNVANGVNHWLKIQDVTKAKSTSKNYRSKSKHVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDVF
TIVRGVWYVAFEDGIIRSNPLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCWTGLSLSEVIALAWE
DIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQMQHTMMLPTIELEVKQRDNITTKNENIRFVFLNGK
SGLPWYDHSVRRWFTGILERTKLRHRGPNQCRHTFASQLLSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANRV
SEMLGFTKDTEGEQNGDFAQLLPRCNKGNQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=403, Percent_Identity=30.7692307692308, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49987; Mature: 49856

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLPKGVEKLPVGVEINFNTVRIVFMFNGKRYREPLKGYSKITKSVIKYAENKRNTILT
CCCCCCCHHHCCCCEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EIAENRFDYIAHFPESIKAMEFAGILIERRNVANGVNHWLKIQDVTKAKSTSKNYRSKSK
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCC
HVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDVFTIVRGVWYVAFEDGIIRSN
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCC
PLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCWTGLSLSEVIALAW
CHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHH
EDIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQMQHTMMLPTIELEV
HCCCEEEEEEEEHHHHHHHHHCCCHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEE
KQRDNITTKNENIRFVFLNGKSGLPWYDHSVRRWFTGILERTKLRHRGPNQCRHTFASQL
ECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANRVSEMLGFTKDTEGEQNGDFA
HHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
QLLPRCNKGNQ
HHHHCCCCCCC
>Mature Secondary Structure 
SNLPKGVEKLPVGVEINFNTVRIVFMFNGKRYREPLKGYSKITKSVIKYAENKRNTILT
CCCCCCHHHCCCCEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
EIAENRFDYIAHFPESIKAMEFAGILIERRNVANGVNHWLKIQDVTKAKSTSKNYRSKSK
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCC
HVINYFGGDQLISEISRSHLLMFQANMLKAGLSPKTVNDVFTIVRGVWYVAFEDGIIRSN
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCC
PLDRISNIERDTLEETADPFTRDELERIAADDTSRRGDINMIMFCCWTGLSLSEVIALAW
CHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHH
EDIDTVNWTVNIRRARVLTQYKVPKERGRVRVIELIDPAKEWLIEQMQHTMMLPTIELEV
HCCCEEEEEEEEHHHHHHHHHCCCHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEE
KQRDNITTKNENIRFVFLNGKSGLPWYDHSVRRWFTGILERTKLRHRGPNQCRHTFASQL
ECCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LSNYVPLEWVARQLGHSDTTMIKKHYGKWIPKDSQKMANRVSEMLGFTKDTEGEQNGDFA
HHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
QLLPRCNKGNQ
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]