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The map label for this gene is ydaM [H]

Identifier: 160874994

GI number: 160874994

Start: 2247382

End: 2248407

Strand: Reverse

Name: ydaM [H]

Synonym: Sbal195_1879

Alternate gene names: 160874994

Gene position: 2248407-2247382 (Counterclockwise)

Preceding gene: 160874996

Following gene: 160874990

Centisome position: 42.05

GC content: 48.34

Gene sequence:

>1026_bases
ATGTCGCTAGAGTTATTACAAGCCGCTGCACTGAATCTCAAAAAAGCAGTGCCTCTGATGCTCAAACATAAAATTCCGAC
CACCCCGGTTAACTATGCGCTTTGGTACACTTATGTTGGTGAACAGAATCCCGAATTAAATCAACGACTCGATACCGTTA
TCGCCCAGTACAACACTTGTCCTCCTGTGAGTAGCGAACTCTTATATCGCCAGTATGTTGCCGATCCCGTTGAACTCGAT
GTCCGCGAAATGCGCCAGAATCTGGATGCTATGGTGACTGAGCTGTCCCAATCGCTCAAAGATACCAATCTAGATGCCAA
TGAATTCCAGTCGCGCATCGAGAGTAATTTTGAAAAGCTCAACCGCATCGAAGATGAGGGTTTTAGTGTTGAGCAAGTGC
TCGATCTGGTGCGCAGTTTAGTGAAAGAGTCGGACAATATTCGCTCGAGCACTGAGTTCTTTACCGGACAATTGCAGAAA
GCGCAAACCGAAATCGATGCGCTAAAGAAAAAGCTCGAACAGACAGAAAAAGATGTGCTCTACGATGCGCTGACTGGCTG
CTTTAATCGCCGCGCCTTCGACAGCGATTTTGCTGGCATGTTAGCCCAAGCGCCCTTAGGCACCTGCGTGATCTTGGCCG
ATATCGACCATTTTAAAGTGTTTAACGACACCTACGGCCACCAGCTCGGCGACCAAGTGTTACGCGCCGTGGCAAAACGG
CTACAGGAATCCTGCCGCGATGGCGCAAAACTGTATCGTTTTGGCGGTGAAGAATTTGTGATTATTGTGCCTAAAAGTCA
GTTACGCATCGCAAGGCAACTGGCCGAAGCCATGCGCCGTGGACTCGAAAAGCTCAGTTTGAAAGACAGACGTAAAGACG
AGCGCATCAATAATATCAGTGCCTCATTTGGGGTTGCCCAATGGCAAGAAAAACAAACGGGCATGCAGTTGATTGAAGCG
GCAGATAAATTACTCTATGACGCGAAACGTTTAGGTCGAAATCGCGTGTTGCCGATCAGCAACTGA

Upstream 100 bases:

>100_bases
GAGCCGACGATGCTTGCGGTTAGCTTTGAACAGATAACAACAGAATAAAATAGCGAAAATCTTAAAATATCCGTTTATTT
TCATTAAGTAAGGTAACAAT

Downstream 100 bases:

>100_bases
TTGTGATGGCTTGATTATGCTAACTGGAACGTAATGAATTAGCCTGAAGCCGATGATTCGGCTTCAGGCTAAGATGATTA
AAAGACGCTCATTTGGCGGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTELSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKR
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEA
ADKLLYDAKRLGRNRVLPISN

Sequences:

>Translated_341_residues
MSLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELD
VREMRQNLDAMVTELSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQK
AQTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKR
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEA
ADKLLYDAKRLGRNRVLPISN
>Mature_340_residues
SLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTCPPVSSELLYRQYVADPVELDV
REMRQNLDAMVTELSQSLKDTNLDANEFQSRIESNFEKLNRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKA
QTEIDALKKKLEQTEKDVLYDALTGCFNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKRL
QESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNISASFGVAQWQEKQTGMQLIEAA
DKLLYDAKRLGRNRVLPISN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=36.7231638418079, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=198, Percent_Identity=34.3434343434343, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=40.1234567901235, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=36.7088607594937, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=40.6976744186046, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787056, Length=170, Percent_Identity=34.7058823529412, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=30.6748466257669, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787802, Length=131, Percent_Identity=35.1145038167939, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=31.1764705882353, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=32.5301204819277, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=29.1925465838509, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38870; Mature: 38739

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTC
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHCCCC
PPVSSELLYRQYVADPVELDVREMRQNLDAMVTELSQSLKDTNLDANEFQSRIESNFEKL
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVL
HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCFNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKR
HHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNIS
HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLELLQAAALNLKKAVPLMLKHKIPTTPVNYALWYTYVGEQNPELNQRLDTVIAQYNTC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHCCCC
PPVSSELLYRQYVADPVELDVREMRQNLDAMVTELSQSLKDTNLDANEFQSRIESNFEKL
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
NRIEDEGFSVEQVLDLVRSLVKESDNIRSSTEFFTGQLQKAQTEIDALKKKLEQTEKDVL
HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDALTGCFNRRAFDSDFAGMLAQAPLGTCVILADIDHFKVFNDTYGHQLGDQVLRAVAKR
HHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LQESCRDGAKLYRFGGEEFVIIVPKSQLRIARQLAEAMRRGLEKLSLKDRRKDERINNIS
HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASFGVAQWQEKQTGMQLIEAADKLLYDAKRLGRNRVLPISN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]