| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yfbK [C]
Identifier: 160874992
GI number: 160874992
Start: 2244122
End: 2246437
Strand: Direct
Name: yfbK [C]
Synonym: Sbal195_1877
Alternate gene names: 160874992
Gene position: 2244122-2246437 (Clockwise)
Preceding gene: 160874991
Following gene: 160874993
Centisome position: 41.97
GC content: 49.96
Gene sequence:
>2316_bases ATGATCACAGGGAAAAGGGTAAAAGAAATCAGCGAAAGCTTAGCAATATTAATGATCAGTGCCGCCGTATGTTGGGGCTT GCCCTTTTTGGCATTAGCCTCACCCAATAGCACGGGCACATTGTCTGAACCGCAGAATATTGCTTCGGCGCTGGTCGGCG CAAATACTGCTCAAAGTACGGCAGAATCACAGGTCATTAATTACGATGACATTACCCAGGGATTATTACTTTATCGCCAG CCGAGCGGCGCTTGGGTGCCATCTTTGCCACTCGATACACAAGTGTCGATGCAAGTCTCTGGCTTAAGTAATCGCGTGAG TGTGAAGCAGGTTTTTCGCAATAACACTGAGTTTGTGTTGAATGGGCAGTATTTGTTCCCGCTGCCCAATGAAGCTGCGG TGGATTCGCTGCGATTACATATTGGCCAAAGGGTTATCGAAGGGCAAATTCATCCTAAGGCCGAGGCTAAGCAGATTTTT GAGCAAGCCAAAGTTGAAGGCAAACGCGCCAGCTTAGTGAGCCAAGAGCGGCCGAATATGTTCACGACAGAAGTGGCCAA CCTAGCACCACAAGAGGATCTGATTGTTGAAGTCAGCTATCAGGAGAGCATCAAATATGAAGATGGCTTATTTAGCCTAC GTTTTCCGCTGGTGGTCGCGCCTCGGTATATCCCGGGCTTAACCTCTGACGCCAGTGCTAGCGATTCAGATAATCCTATA GCACAGAGCAGCCAATCGAGCCGAGTGACCAGCTCGCAGGTGTTTGATGCTGACCGGATTGTGGCGCCTGTGCGGGACGG CGCCAATGGACGCGATCCTGTGCTCAAGGCGGACATTCAAGTCTTGCTGGCAAAGGGGGTTGATAAAGCGTCAATTGAGA GTCCTTACCATGACATCAAACTCAAGCAAACCAATAGCGGCGTCGATGTTTCACTGGCACAACGCGTGCCTGCCAATCGT GACTTTGTACTGCAATGGCGCGTACAGCAGGGTACGAGTCCAATGGCTTGGGTGTTTAATCAACAGGGTAAGACCCATAA ACCCGATGGCGATAATTTGTCTCAGGACACGCTTGAAACCAGCAAAGCTAACGGCGTAAATGAAGATAATTACAGTCTCG TCATGGTGTTGCCTCCTAAGGTCGAAAAGAGCACCCAACCGAGTTTGCCCCGTGAATTAATTTTGGTGATTGATACTTCG GGCTCTATGGCGGGGGATTCTATCGTTCAAGCCAAAAATGCACTGCTTTATGCATTAAAAGGACTCAAGCCCGAGGACAG TTTTAACATTATCGAATTTAACTCCAGTCTGTCTCAGTTTTCAGCGACATCATTACCGGCGACTTCGTCGAATTTGTCCC GTGCCCGTCAATTTGTGAGCCGTTTACAAGCCGATGGTGGCACTGAAATGGCGCTGGCACTGGATGCTGCCTTGCCAAAA TCCTTGGGCAGTGCCTCGCCCGATGCTGTGCAGCCTTTGCGCCAAGTGATCTTTATGACCGACGGCTCTGTGGGCAATGA GCAAGCCTTGTTCGATTTGATCCGCTATCAAATCGGAGAGAGCCGCTTATTTACTGTCGGCATAGGCTCAGCGCCTAATT CTCACTTTATGCAAAGGGCGGCAGAGCTGGGTCGTGGCACTTTTACTTATATTGGCAAAGTGGATGAAGTCGACGAGAAG ATCAGCGCCTTGCTGAGCAAAATTCAATATCCCGTATTAACCGATATTCAAGTGCGTTTTGATGATGGCAGTGTGCCCGA TTACTGGCCATCACCGATTGCCGATCTGTATCGCGGCGAGCCTGTGCTTGTGAGTCTAAAACGCAGCGCCCGTGAGCCGC AGGAATTAGTGATCTCAGGTCGCCAAGGGCATAAAAACTGGCAACAGTCGTTATCGCTTCAGGACAACTCAGCGGGACTT ATCACCAATCAAGGTGCGGGTTTAGATTTACTCTGGTCGCGTAAACAGATTGGTGCATTGGAGCTGAGTAAAAATGGCGC AAATGATGACAAGGTAAAGCAGCAAGTCACGGCCTTGTCGATGAATTATCACTTAGTCAGCGCTTATACCAGCTTAGTGG CGGTGGACTTAACCCCCATAGATTCAACTGCAATGAGCCGTGATGCCGTGGTGCGTCAGCACTTGCCCTTAGGTTGGCAG CCTTTTGGTGCCTTGCCACAAACTGCGACCTCGAGCCGTTTTGATATGTTATTGGGTGCGCTGACCTTGCTGTTGGCCTT GGTACTTATGGGATCGATTCTGCGACAAAAACGTGAAGAGAACGCGGCCATGATGGCGCTTGCCTGTCATCGATGA
Upstream 100 bases:
>100_bases GATGTTAGTCGTCCATTCTAAGCCGTCAATTTAGAACATTCATTTTAACGACTGCGAACGTCAGTCCATATTGGTTAATA GAAAGAAGGAAGCCTTTGTG
Downstream 100 bases:
>100_bases ACCAATGAATCATGAACGACGAGTAAAGCCCGATGAGCAAAGGCAGAACACAGCGATTTTTAGTGGTGGGATTATTTTTA ATTGGCGCAACATTGTTAGG
Product: cell wall anchor domain-containing protein
Products: NA
Alternate protein names: Von Willebrand Factor Type A Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin; Von Willebrand Factor Type A; Inter-Alpha-Trypsin Inhibitor Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin Domain Protein; Cell Wall Anchor Domain-Containing Protein; Vault Protein Inter-Alpha-Trypsin Domain-Containing Protein; Von Willebrand Factor Type A Domain Protein; LPXTG-Motif Cell Wall Anchor Domain-Containing Protein; Transmembrane Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; Vault Protein Inter-Alpha-Trypsin Domain; Protein ContAining A Von Willebrand Factor Type A Domain; Inter-Alpha-Trypsin Inhibitor Domain Protein; Von Willebrand Factor
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MITGKRVKEISESLAILMISAAVCWGLPFLALASPNSTGTLSEPQNIASALVGANTAQSTAESQVINYDDITQGLLLYRQ PSGAWVPSLPLDTQVSMQVSGLSNRVSVKQVFRNNTEFVLNGQYLFPLPNEAAVDSLRLHIGQRVIEGQIHPKAEAKQIF EQAKVEGKRASLVSQERPNMFTTEVANLAPQEDLIVEVSYQESIKYEDGLFSLRFPLVVAPRYIPGLTSDASASDSDNPI AQSSQSSRVTSSQVFDADRIVAPVRDGANGRDPVLKADIQVLLAKGVDKASIESPYHDIKLKQTNSGVDVSLAQRVPANR DFVLQWRVQQGTSPMAWVFNQQGKTHKPDGDNLSQDTLETSKANGVNEDNYSLVMVLPPKVEKSTQPSLPRELILVIDTS GSMAGDSIVQAKNALLYALKGLKPEDSFNIIEFNSSLSQFSATSLPATSSNLSRARQFVSRLQADGGTEMALALDAALPK SLGSASPDAVQPLRQVIFMTDGSVGNEQALFDLIRYQIGESRLFTVGIGSAPNSHFMQRAAELGRGTFTYIGKVDEVDEK ISALLSKIQYPVLTDIQVRFDDGSVPDYWPSPIADLYRGEPVLVSLKRSAREPQELVISGRQGHKNWQQSLSLQDNSAGL ITNQGAGLDLLWSRKQIGALELSKNGANDDKVKQQVTALSMNYHLVSAYTSLVAVDLTPIDSTAMSRDAVVRQHLPLGWQ PFGALPQTATSSRFDMLLGALTLLLALVLMGSILRQKREENAAMMALACHR
Sequences:
>Translated_771_residues MITGKRVKEISESLAILMISAAVCWGLPFLALASPNSTGTLSEPQNIASALVGANTAQSTAESQVINYDDITQGLLLYRQ PSGAWVPSLPLDTQVSMQVSGLSNRVSVKQVFRNNTEFVLNGQYLFPLPNEAAVDSLRLHIGQRVIEGQIHPKAEAKQIF EQAKVEGKRASLVSQERPNMFTTEVANLAPQEDLIVEVSYQESIKYEDGLFSLRFPLVVAPRYIPGLTSDASASDSDNPI AQSSQSSRVTSSQVFDADRIVAPVRDGANGRDPVLKADIQVLLAKGVDKASIESPYHDIKLKQTNSGVDVSLAQRVPANR DFVLQWRVQQGTSPMAWVFNQQGKTHKPDGDNLSQDTLETSKANGVNEDNYSLVMVLPPKVEKSTQPSLPRELILVIDTS GSMAGDSIVQAKNALLYALKGLKPEDSFNIIEFNSSLSQFSATSLPATSSNLSRARQFVSRLQADGGTEMALALDAALPK SLGSASPDAVQPLRQVIFMTDGSVGNEQALFDLIRYQIGESRLFTVGIGSAPNSHFMQRAAELGRGTFTYIGKVDEVDEK ISALLSKIQYPVLTDIQVRFDDGSVPDYWPSPIADLYRGEPVLVSLKRSAREPQELVISGRQGHKNWQQSLSLQDNSAGL ITNQGAGLDLLWSRKQIGALELSKNGANDDKVKQQVTALSMNYHLVSAYTSLVAVDLTPIDSTAMSRDAVVRQHLPLGWQ PFGALPQTATSSRFDMLLGALTLLLALVLMGSILRQKREENAAMMALACHR >Mature_771_residues MITGKRVKEISESLAILMISAAVCWGLPFLALASPNSTGTLSEPQNIASALVGANTAQSTAESQVINYDDITQGLLLYRQ PSGAWVPSLPLDTQVSMQVSGLSNRVSVKQVFRNNTEFVLNGQYLFPLPNEAAVDSLRLHIGQRVIEGQIHPKAEAKQIF EQAKVEGKRASLVSQERPNMFTTEVANLAPQEDLIVEVSYQESIKYEDGLFSLRFPLVVAPRYIPGLTSDASASDSDNPI AQSSQSSRVTSSQVFDADRIVAPVRDGANGRDPVLKADIQVLLAKGVDKASIESPYHDIKLKQTNSGVDVSLAQRVPANR DFVLQWRVQQGTSPMAWVFNQQGKTHKPDGDNLSQDTLETSKANGVNEDNYSLVMVLPPKVEKSTQPSLPRELILVIDTS GSMAGDSIVQAKNALLYALKGLKPEDSFNIIEFNSSLSQFSATSLPATSSNLSRARQFVSRLQADGGTEMALALDAALPK SLGSASPDAVQPLRQVIFMTDGSVGNEQALFDLIRYQIGESRLFTVGIGSAPNSHFMQRAAELGRGTFTYIGKVDEVDEK ISALLSKIQYPVLTDIQVRFDDGSVPDYWPSPIADLYRGEPVLVSLKRSAREPQELVISGRQGHKNWQQSLSLQDNSAGL ITNQGAGLDLLWSRKQIGALELSKNGANDDKVKQQVTALSMNYHLVSAYTSLVAVDLTPIDSTAMSRDAVVRQHLPLGWQ PFGALPQTATSSRFDMLLGALTLLLALVLMGSILRQKREENAAMMALACHR
Specific function: Unknown
COG id: COG2304
COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI112789550, Length=641, Percent_Identity=22.4648985959438, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI262050538, Length=324, Percent_Identity=26.5432098765432, Blast_Score=101, Evalue=4e-21, Organism=Homo sapiens, GI31542984, Length=324, Percent_Identity=26.5432098765432, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI133925809, Length=328, Percent_Identity=26.8292682926829, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI38195080, Length=522, Percent_Identity=24.5210727969349, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI194306644, Length=522, Percent_Identity=24.5210727969349, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI210147462, Length=572, Percent_Identity=21.6783216783217, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI70778918, Length=326, Percent_Identity=23.6196319018405, Blast_Score=90, Evalue=7e-18, Organism=Homo sapiens, GI153945711, Length=336, Percent_Identity=21.4285714285714, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI153945780, Length=332, Percent_Identity=21.6867469879518, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI49355778, Length=332, Percent_Identity=21.6867469879518, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI38348336, Length=339, Percent_Identity=25.6637168141593, Blast_Score=80, Evalue=9e-15, Organism=Homo sapiens, GI261878614, Length=324, Percent_Identity=22.5308641975309, Blast_Score=73, Evalue=9e-13, Organism=Homo sapiens, GI156119625, Length=324, Percent_Identity=22.5308641975309, Blast_Score=73, Evalue=9e-13, Organism=Homo sapiens, GI261878618, Length=323, Percent_Identity=22.6006191950464, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI261878616, Length=323, Percent_Identity=22.6006191950464, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83787; Mature: 83787
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50847 GRAM_POS_ANCHORING ; PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITGKRVKEISESLAILMISAAVCWGLPFLALASPNSTGTLSEPQNIASALVGANTAQST CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHH AESQVINYDDITQGLLLYRQPSGAWVPSLPLDTQVSMQVSGLSNRVSVKQVFRNNTEFVL HHHCCCCHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEE NGQYLFPLPNEAAVDSLRLHIGQRVIEGQIHPKAEAKQIFEQAKVEGKRASLVSQERPNM ECEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC FTTEVANLAPQEDLIVEVSYQESIKYEDGLFSLRFPLVVAPRYIPGLTSDASASDSDNPI HHHHHHHCCCCCCEEEEEEHHHCCCCCCCEEEEECCEEECCHHCCCCCCCCCCCCCCCCC AQSSQSSRVTSSQVFDADRIVAPVRDGANGRDPVLKADIQVLLAKGVDKASIESPYHDIK CCCCCCCCCCHHHHCCCHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEE LKQTNSGVDVSLAQRVPANRDFVLQWRVQQGTSPMAWVFNQQGKTHKPDGDNLSQDTLET EEECCCCCCEEHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH SKANGVNEDNYSLVMVLPPKVEKSTQPSLPRELILVIDTSGSMAGDSIVQAKNALLYALK HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH GLKPEDSFNIIEFNSSLSQFSATSLPATSSNLSRARQFVSRLQADGGTEMALALDAALPK CCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH SLGSASPDAVQPLRQVIFMTDGSVGNEQALFDLIRYQIGESRLFTVGIGSAPNSHFMQRA HHCCCCCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH AELGRGTFTYIGKVDEVDEKISALLSKIQYPVLTDIQVRFDDGSVPDYWPSPIADLYRGE HHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCC PVLVSLKRSAREPQELVISGRQGHKNWQQSLSLQDNSAGLITNQGAGLDLLWSRKQIGAL CEEEEECHHCCCCHHHEEECCCCCCCHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCEE ELSKNGANDDKVKQQVTALSMNYHLVSAYTSLVAVDLTPIDSTAMSRDAVVRQHLPLGWQ EECCCCCCHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCC PFGALPQTATSSRFDMLLGALTLLLALVLMGSILRQKREENAAMMALACHR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure MITGKRVKEISESLAILMISAAVCWGLPFLALASPNSTGTLSEPQNIASALVGANTAQST CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHH AESQVINYDDITQGLLLYRQPSGAWVPSLPLDTQVSMQVSGLSNRVSVKQVFRNNTEFVL HHHCCCCHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEE NGQYLFPLPNEAAVDSLRLHIGQRVIEGQIHPKAEAKQIFEQAKVEGKRASLVSQERPNM ECEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCC FTTEVANLAPQEDLIVEVSYQESIKYEDGLFSLRFPLVVAPRYIPGLTSDASASDSDNPI HHHHHHHCCCCCCEEEEEEHHHCCCCCCCEEEEECCEEECCHHCCCCCCCCCCCCCCCCC AQSSQSSRVTSSQVFDADRIVAPVRDGANGRDPVLKADIQVLLAKGVDKASIESPYHDIK CCCCCCCCCCHHHHCCCHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCEE LKQTNSGVDVSLAQRVPANRDFVLQWRVQQGTSPMAWVFNQQGKTHKPDGDNLSQDTLET EEECCCCCCEEHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH SKANGVNEDNYSLVMVLPPKVEKSTQPSLPRELILVIDTSGSMAGDSIVQAKNALLYALK HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH GLKPEDSFNIIEFNSSLSQFSATSLPATSSNLSRARQFVSRLQADGGTEMALALDAALPK CCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH SLGSASPDAVQPLRQVIFMTDGSVGNEQALFDLIRYQIGESRLFTVGIGSAPNSHFMQRA HHCCCCCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH AELGRGTFTYIGKVDEVDEKISALLSKIQYPVLTDIQVRFDDGSVPDYWPSPIADLYRGE HHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCC PVLVSLKRSAREPQELVISGRQGHKNWQQSLSLQDNSAGLITNQGAGLDLLWSRKQIGAL CEEEEECHHCCCCHHHEEECCCCCCCHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCEE ELSKNGANDDKVKQQVTALSMNYHLVSAYTSLVAVDLTPIDSTAMSRDAVVRQHLPLGWQ EECCCCCCHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCC PFGALPQTATSSRFDMLLGALTLLLALVLMGSILRQKREENAAMMALACHR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA