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The map label for this gene is csgD [H]

Identifier: 160874947

GI number: 160874947

Start: 2197117

End: 2197752

Strand: Direct

Name: csgD [H]

Synonym: Sbal195_1832

Alternate gene names: 160874947

Gene position: 2197117-2197752 (Clockwise)

Preceding gene: 160874945

Following gene: 160874949

Centisome position: 41.09

GC content: 44.65

Gene sequence:

>636_bases
ATGTTCAAAATATTACATTGGATTGTAGTGTCACGATCGCAAGTATTAATGGAACTGCTAGCAGGACGTTGGCCACAGGA
GTTTCTCGTTAAGTTGACGCAAGTCAGCCCAGATGAGATGTGTGAACAAATCAAGGATAATCATGCCTCCATGGTAGTGA
TTGATTTAGCGACTGTTGATCTTCAAAAAGCCCATCAATTTCAGCGTTTACTTGCCCGTGAACAACCAAGTGTACGAGTC
GTCTATTTACAATTCCCTAAACAAGTGGATGCGCGCTTTTTAATGCAAGCTGCCACGACCGCAGGGGTGTTTTATCTCGA
TGCGGGTTTAACTGAGATTAGCCTAGGATTCTCGAATATTTTACGAGGCCATAGGGTGATCCCAATTCAACTCGTCAATG
GGGTGAACGATGACTTTGGTTTGTTCGAAGATACTGAACCGCTGACGATTCGTGAGCGAGAAGTATTACAAGCCCTCTTA
ACGGGTAGCACTAACTTAGATATTGCCAATCAGTTGTTTGTCAGTGAAAGCACGATAAAAACCCATTTGTACCGAGTATT
CCGTAAGATCGGTGTGTCGAGCCGTGGTCAAGCGATCGCGTGGGCGCAAACCTATTTGCACGATGTGGTGGTTTAA

Upstream 100 bases:

>100_bases
CGATAGACTTGGAAGTCTATTGAACGGATGTTGAAGTTGTATTGAGAGGATCTTAGGTTCTCAAAGTGAATAATCGTTAA
TCAGACAGGGAGTGAGCAGG

Downstream 100 bases:

>100_bases
GTCTGTATTAGCACTGATAGAAGACACTGATTTGGCAAGGGAATACTGATCTAGACATAGATGTGTTCGTTTAAAGATTA
GTACCTAAGTTAAGTGTTAT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEQIKDNHASMVVIDLATVDLQKAHQFQRLLAREQPSVRV
VYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGFSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
TGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV

Sequences:

>Translated_211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEQIKDNHASMVVIDLATVDLQKAHQFQRLLAREQPSVRV
VYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGFSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
TGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
>Mature_211_residues
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEQIKDNHASMVVIDLATVDLQKAHQFQRLLAREQPSVRV
VYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGFSNILRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALL
TGSTNLDIANQLFVSESTIKTHLYRVFRKIGVSSRGQAIAWAQTYLHDVVV

Specific function: The master regulator for adhesive curli fimbriae expression; necessary for transcription of the csgBAC/ymdA operon. Plays a positive role in biofilm formation. May have the capability to respond to starvation and/or high cell density by activating csgBA t

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787277, Length=162, Percent_Identity=32.7160493827161, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23950; Mature: 23950

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEQIKDNHASMVVIDLATVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEHHHH
LQKAHQFQRLLAREQPSVRVVYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGFSNI
HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCHHHHHCHHHH
LRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLTGSTNLDIANQLFVSESTIK
HCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
THLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFKILHWIVVSRSQVLMELLAGRWPQEFLVKLTQVSPDEMCEQIKDNHASMVVIDLATVD
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEHHHH
LQKAHQFQRLLAREQPSVRVVYLQFPKQVDARFLMQAATTAGVFYLDAGLTEISLGFSNI
HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCHHHHHCHHHH
LRGHRVIPIQLVNGVNDDFGLFEDTEPLTIREREVLQALLTGSTNLDIANQLFVSESTIK
HCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
THLYRVFRKIGVSSRGQAIAWAQTYLHDVVV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8817489; 8905232; 9278503 [H]