| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160874903
Identifier: 160874903
GI number: 160874903
Start: 2143362
End: 2144525
Strand: Direct
Name: 160874903
Synonym: Sbal195_1788
Alternate gene names: NA
Gene position: 2143362-2144525 (Clockwise)
Preceding gene: 160874902
Following gene: 160874907
Centisome position: 40.08
GC content: 47.34
Gene sequence:
>1164_bases ATGAAACAAGCAAAACTAAGCTTGATGGGTAGTGCAATATTATTGGCATTAGCAAGTTCGGCCAATGCGGCATCACTAAA AGATACGGATGTTGAGTTTGGCGGTTATATCAAAGCTGACATTATGTTCAGTGATTATGGCAATGGCGCACCGGATTCGG GGGATCTCTCTAGGCAGTTTTATGTTCCTGGCACTATTTATGGAAAAGAAGGTAATGGCAATCAAGTCGTGGATTTTCAA GCTCGCGAAACGCGTTTTAATTTCAAAGCGACGACCGATGTTGATGGTCATAAACTTTCTGGCTTTATTGAACTCGATTT TATGACCCACACCGATGGCAATGAACGCACTTCCAACAGCTATTCACCTCGTATTCGCCATGCATTTGTCTCCTATGACA ATTGGACCGTAGGTCAAACGTGGACCACCTTCCAAAATGCTGCGGCGTTACCTGAGAATCTCGATTTTGTTGGTGCAGCC GATGGCACCCCGTTCGCCCGCCAAACGCTATTGCGCTATACCCAAGGTAATTTCCAATTCGCGATCGAAAATCCTGAAAC CACAGTCACGCCAAATCAGGGCGGTGCCCGCATTACCAGTGGTAGCGGGGTAATCCCCGATGTTATCGCGCGGTATAACC TCAAAACGGATGGCGGCGCGGCGTTCTCCTTTGCGGGTATTGCCCGTCAGTTGAATTTAGAAACTAAGATAGGTGCGACT CAGATTGATAGCTCAGCCCTAGGATATGGCGCGAGTGTGGCGGGCATTATTCCGGTCGGCAAAGATGATCTTCGCTTCAC GGCCACCTATGGTGAAGGCTTAGGTCGTTATATGGCACTCAATTACATTAATGCAGGCGTGCTAGATGCTAACGGTGATA TCGAGTCGATTCGTACTTTCGGTGGATTTGTGTCTTATCGTCATTGGTGGAATGAGCAGTGGCGCAGCAGTGTAACCTTG TCAGGCATGCAAGCGGATAACGATGTGGCTTTAACCGGTTCAGGTGTGAATAAGGATGCTTATTCAGGCTATATCAACTT ACTTTACTCGCCAAGCAAACCGCTGACCTTTGGGGTCGAGTATATGTACGCCAAGAACAGTAAAGAAAATGGCGATGATG GTGATTTGAGCCGCATTATGTTCTCGGCTAAGTATGTGCTCTAA
Upstream 100 bases:
>100_bases TTTCTACTTTTGTCTCATAGACCTATTGCCAATGTTTCTCACTTGTTAATTTGTCCATATTGGTTGCGGATAAATAATAA CAATTGGGGAAAGACAAAAA
Downstream 100 bases:
>100_bases TCTTATTTGTTTGCGATAAAAACTAAAAAGGAGACCTTAGGTCTCCTTTTGCATTAAGCGGGTCACATATGTGTAGAGCT TAATCTAACAGATTGTTTTC
Product: porin
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MKQAKLSLMGSAILLALASSANAASLKDTDVEFGGYIKADIMFSDYGNGAPDSGDLSRQFYVPGTIYGKEGNGNQVVDFQ ARETRFNFKATTDVDGHKLSGFIELDFMTHTDGNERTSNSYSPRIRHAFVSYDNWTVGQTWTTFQNAAALPENLDFVGAA DGTPFARQTLLRYTQGNFQFAIENPETTVTPNQGGARITSGSGVIPDVIARYNLKTDGGAAFSFAGIARQLNLETKIGAT QIDSSALGYGASVAGIIPVGKDDLRFTATYGEGLGRYMALNYINAGVLDANGDIESIRTFGGFVSYRHWWNEQWRSSVTL SGMQADNDVALTGSGVNKDAYSGYINLLYSPSKPLTFGVEYMYAKNSKENGDDGDLSRIMFSAKYVL
Sequences:
>Translated_387_residues MKQAKLSLMGSAILLALASSANAASLKDTDVEFGGYIKADIMFSDYGNGAPDSGDLSRQFYVPGTIYGKEGNGNQVVDFQ ARETRFNFKATTDVDGHKLSGFIELDFMTHTDGNERTSNSYSPRIRHAFVSYDNWTVGQTWTTFQNAAALPENLDFVGAA DGTPFARQTLLRYTQGNFQFAIENPETTVTPNQGGARITSGSGVIPDVIARYNLKTDGGAAFSFAGIARQLNLETKIGAT QIDSSALGYGASVAGIIPVGKDDLRFTATYGEGLGRYMALNYINAGVLDANGDIESIRTFGGFVSYRHWWNEQWRSSVTL SGMQADNDVALTGSGVNKDAYSGYINLLYSPSKPLTFGVEYMYAKNSKENGDDGDLSRIMFSAKYVL >Mature_387_residues MKQAKLSLMGSAILLALASSANAASLKDTDVEFGGYIKADIMFSDYGNGAPDSGDLSRQFYVPGTIYGKEGNGNQVVDFQ ARETRFNFKATTDVDGHKLSGFIELDFMTHTDGNERTSNSYSPRIRHAFVSYDNWTVGQTWTTFQNAAALPENLDFVGAA DGTPFARQTLLRYTQGNFQFAIENPETTVTPNQGGARITSGSGVIPDVIARYNLKTDGGAAFSFAGIARQLNLETKIGAT QIDSSALGYGASVAGIIPVGKDDLRFTATYGEGLGRYMALNYINAGVLDANGDIESIRTFGGFVSYRHWWNEQWRSSVTL SGMQADNDVALTGSGVNKDAYSGYINLLYSPSKPLTFGVEYMYAKNSKENGDDGDLSRIMFSAKYVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41931; Mature: 41931
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQAKLSLMGSAILLALASSANAASLKDTDVEFGGYIKADIMFSDYGNGAPDSGDLSRQF CCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEE YVPGTIYGKEGNGNQVVDFQARETRFNFKATTDVDGHKLSGFIELDFMTHTDGNERTSNS ECCEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCC YSPRIRHAFVSYDNWTVGQTWTTFQNAAALPENLDFVGAADGTPFARQTLLRYTQGNFQF CCCCEEEEEEECCCEECCCEEHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEE AIENPETTVTPNQGGARITSGSGVIPDVIARYNLKTDGGAAFSFAGIARQLNLETKIGAT EEECCCEEECCCCCCCEEECCCCCCHHHHHHEECCCCCCCEEEHHHHHHHCCCCCCCCCE QIDSSALGYGASVAGIIPVGKDDLRFTATYGEGLGRYMALNYINAGVLDANGDIESIRTF ECCCCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCEEEEEEECCEEEECCCCHHHHHHH GGFVSYRHWWNEQWRSSVTLSGMQADNDVALTGSGVNKDAYSGYINLLYSPSKPLTFGVE HHHHHHHHHHCHHHHCEEEEECEECCCCEEEECCCCCCCHHCCEEEEEECCCCCEEEEEE YMYAKNSKENGDDGDLSRIMFSAKYVL EEEECCCCCCCCCCHHHHHHHEEEECC >Mature Secondary Structure MKQAKLSLMGSAILLALASSANAASLKDTDVEFGGYIKADIMFSDYGNGAPDSGDLSRQF CCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEE YVPGTIYGKEGNGNQVVDFQARETRFNFKATTDVDGHKLSGFIELDFMTHTDGNERTSNS ECCEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCCCC YSPRIRHAFVSYDNWTVGQTWTTFQNAAALPENLDFVGAADGTPFARQTLLRYTQGNFQF CCCCEEEEEEECCCEECCCEEHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEE AIENPETTVTPNQGGARITSGSGVIPDVIARYNLKTDGGAAFSFAGIARQLNLETKIGAT EEECCCEEECCCCCCCEEECCCCCCHHHHHHEECCCCCCCEEEHHHHHHHCCCCCCCCCE QIDSSALGYGASVAGIIPVGKDDLRFTATYGEGLGRYMALNYINAGVLDANGDIESIRTF ECCCCCCCCCCCEEEEEECCCCCEEEEEEHHCCCCCEEEEEEECCEEEECCCCHHHHHHH GGFVSYRHWWNEQWRSSVTLSGMQADNDVALTGSGVNKDAYSGYINLLYSPSKPLTFGVE HHHHHHHHHHCHHHHCEEEEECEECCCCEEEECCCCCCCHHCCEEEEEECCCCCEEEEEE YMYAKNSKENGDDGDLSRIMFSAKYVL EEEECCCCCCCCCCHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA