Click here to switch to the map view.

The map label for this gene is pal [H]

Identifier: 160874901

GI number: 160874901

Start: 2140464

End: 2141000

Strand: Direct

Name: pal [H]

Synonym: Sbal195_1786

Alternate gene names: 160874901

Gene position: 2140464-2141000 (Clockwise)

Preceding gene: 160874900

Following gene: 160874902

Centisome position: 40.03

GC content: 45.81

Gene sequence:

>537_bases
ATGGATCTGAATAAGTTGTTAAAAGCTATGTTGGTAGCACTTCCAATTATGGCTCTTAGTGCATGTAGCTCAACTTCAGA
ATCAGAAACTGATGCAATGGGCTCAACAAACGGTTCAGGTAGTGAACTGAATGGTGGTGGCATTCAAACTGGTGGTGTAG
GCGCAATGTTGTCTGCTGAAGAGCAACAACGCCAGCAGTTAGAAGACTTAAGAAAGCAACACATCATTTACTTCGACTTT
GACCGCAGTGAAGTTCAAACTGATTTCGCCGCAATCTTAGAAGCTCATGGCACTTACTTAGTTGAGCACCCAAGCGTGCG
CGTACTGATTGAAGGCCATGCGGATGAGCGTGGCACGCCTGAGTACAACATCGCACTGGGCGAACGTCGTGCTAAAGCCG
TTGCTAAATACCTACAAGGTATGGGCGTACAGCCAAGCCAAATGAGCGTAGTCAGCTATGGCGAAGAAAAACCACTTGAT
TTTTCTCGCACTGATGAAGGTTTTGGCAAAAACCGTCGTGCAGTTTTAGTTTACTAA

Upstream 100 bases:

>100_bases
TTACCGGCAGGTCAAGGTGAGGTGAAATCACCTTCTTGGTCACCGTTTCTCTAATGTTATACCTTGATTTAATCACATTT
AATTTTATAAGGAACACGTA

Downstream 100 bases:

>100_bases
GATTGAATCTCGGAGAGTAACACAATGAAACGTGCCGTCTTAATTACGGCAATGTTCCTTGGTGCAGGTGCTGCAGTTGC
AGCACCTGCACCTGTGGAAG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MDLNKLLKAMLVALPIMALSACSSTSESETDAMGSTNGSGSELNGGGIQTGGVGAMLSAEEQQRQQLEDLRKQHIIYFDF
DRSEVQTDFAAILEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPLD
FSRTDEGFGKNRRAVLVY

Sequences:

>Translated_178_residues
MDLNKLLKAMLVALPIMALSACSSTSESETDAMGSTNGSGSELNGGGIQTGGVGAMLSAEEQQRQQLEDLRKQHIIYFDF
DRSEVQTDFAAILEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPLD
FSRTDEGFGKNRRAVLVY
>Mature_178_residues
MDLNKLLKAMLVALPIMALSACSSTSESETDAMGSTNGSGSELNGGGIQTGGVGAMLSAEEQQRQQLEDLRKQHIIYFDF
DRSEVQTDFAAILEAHGTYLVEHPSVRVLIEGHADERGTPEYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPLD
FSRTDEGFGKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=178, Percent_Identity=49.438202247191, Blast_Score=179, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19386; Mature: 19386

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNKLLKAMLVALPIMALSACSSTSESETDAMGSTNGSGSELNGGGIQTGGVGAMLSAE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCH
EQQRQQLEDLRKQHIIYFDFDRSEVQTDFAAILEAHGTYLVEHPSVRVLIEGHADERGTP
HHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPLDFSRTDEGFGKNRRAVLVY
CEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MDLNKLLKAMLVALPIMALSACSSTSESETDAMGSTNGSGSELNGGGIQTGGVGAMLSAE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCEECCH
EQQRQQLEDLRKQHIIYFDFDRSEVQTDFAAILEAHGTYLVEHPSVRVLIEGHADERGTP
HHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQGMGVQPSQMSVVSYGEEKPLDFSRTDEGFGKNRRAVLVY
CEEEEECHHHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]