| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
Click here to switch to the map view.
The map label for this gene is 160874891
Identifier: 160874891
GI number: 160874891
Start: 2129290
End: 2130609
Strand: Reverse
Name: 160874891
Synonym: Sbal195_1776
Alternate gene names: NA
Gene position: 2130609-2129290 (Counterclockwise)
Preceding gene: 160874893
Following gene: 160874888
Centisome position: 39.84
GC content: 48.79
Gene sequence:
>1320_bases ATGAATGCAGTCGTTATTGCAGTGTGCTTAATGTTGGCACTCAGTTTAGCTAGGGTGAATGTAGTTATCGCCCTCACCGT GAGCGCCCTTGTGGCGGGACTTGTGGGCGGAATGGATCTGCACCAAACCATAGATGCCTTTAATACGGGCTTAGGTGGCG GCGCGCAAATTGCGCTCAGTTATGCATTATTAGGTGCCTTCGCTGTCGCACTATCGCACTCAGGCTTAACCACGCTGATC TCAAGAAGCATCATCAGTAGTCTTGGGCAAGATCCTAATCCCACCAACACTAACTGGGTTCGCTGGTTACTGCTGTTATC GCTACTTGTCATGTCGATGGCCTCGCAGAATATTTTACCTATTCATATCGCCTTCATTCCGATTTTAGTGCCACCACTGT TACATGTGATGACCAAGCTGAATATCGACCGTCGTTTAGTTGCTTGTGTTTTGACCTTCGGTCTGGTCACAACCTATATG ATTTTACCGATTGGATTTGGTGGCATTTTCTTAAATGACATTCTGCTTTCCAACTTAACCAGTAATGGCTTAGCGGCTGT ACGTGAGCAAATTCCACCAGCCATGTTAATTCCAGCGGCGGGCATGATAGTCGGGTTACTGACAGCTGTGTTTATCAGTT ACCGTAAACCTAGGATCTACGATGAGGCCAAAGTATTGGTTGCAGAGCCAGAAGAAACCCTCAATAAACGCAATATTATC ATTGCCGCAGTGGCGATATTAGCCACCTTAGTGGTGCAACTTGAAACCGATTCGATGATTTTCGGCGCCTTAGTCGGCTT CATGATTTTCAGTTTCTCGGGCGCCTTAAAGCATGTCGCCGACCAAGATATTTTCAATCAAGGCGTGCGCATGATGGCCA ACATCGGCTTTATCATGATTTCTGCCGCAGGTTTTGCCGCAGTAGTGAAAGAAACCGGTGAAGTGGGCACGCTTGTGGCT TCGCTTAGCGACATCATTGGTGATAATAAAGCCCTCGCCGCCTTCTTGATGCTGCTAGTAGGTCTACTGATCACTATGGG GATCGGCTCGTCTTTCTCCACCATTCCGATTATCGCGACCATTTATGTGCCATTGGCGTTAAGTTTTGGTTTTTCAGTGG CGGCGACAATCGCGTTAGTCGGCACCGCCGCAGCGCTGGGTGATGCGGGCTCGCCAGCATCGGATTCCACCTTAGGTCCT ACTGCGGGTTTGAATGCCGATGGTCAACACGACCACATTCGTGACAGCGTGATCCCCACCTTCATCCACTACAATATTCC ACTGTTAGTGTTTGGCTGGATTGCGGCCATGGTGTTGTAA
Upstream 100 bases:
>100_bases TTTTCAGATATTTTTCAGATAAGCCCTCGGCAAACTGGACATCGACAGCCTTTGCAGTCAAAAATAGCATCTTTGGCTTA AAGAATTAAGAAAATTGACT
Downstream 100 bases:
>100_bases ACACGATTGAAGGGATTGAATAGCAGTAATAGAAATTAACGACAGCGCGGACATTCTCCGCGCTGTTTTTTATTGCCGGC TGCAACTTTATTGCGGTCAC
Product: Na+/H+ antiporter NhaC
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MNAVVIAVCLMLALSLARVNVVIALTVSALVAGLVGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTTLI SRSIISSLGQDPNPTNTNWVRWLLLLSLLVMSMASQNILPIHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLAAVREQIPPAMLIPAAGMIVGLLTAVFISYRKPRIYDEAKVLVAEPEETLNKRNII IAAVAILATLVVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLSDIIGDNKALAAFLMLLVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL
Sequences:
>Translated_439_residues MNAVVIAVCLMLALSLARVNVVIALTVSALVAGLVGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTTLI SRSIISSLGQDPNPTNTNWVRWLLLLSLLVMSMASQNILPIHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLAAVREQIPPAMLIPAAGMIVGLLTAVFISYRKPRIYDEAKVLVAEPEETLNKRNII IAAVAILATLVVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLSDIIGDNKALAAFLMLLVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL >Mature_439_residues MNAVVIAVCLMLALSLARVNVVIALTVSALVAGLVGGMDLHQTIDAFNTGLGGGAQIALSYALLGAFAVALSHSGLTTLI SRSIISSLGQDPNPTNTNWVRWLLLLSLLVMSMASQNILPIHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYM ILPIGFGGIFLNDILLSNLTSNGLAAVREQIPPAMLIPAAGMIVGLLTAVFISYRKPRIYDEAKVLVAEPEETLNKRNII IAAVAILATLVVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKETGEVGTLVA SLSDIIGDNKALAAFLMLLVGLLITMGIGSSFSTIPIIATIYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGP TAGLNADGQHDHIRDSVIPTFIHYNIPLLVFGWIAAMVL
Specific function: Unknown
COG id: COG2056
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018461 [H]
Pfam domain/function: PF03553 Na_H_antiporter [H]
EC number: NA
Molecular weight: Translated: 45940; Mature: 45940
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVVIAVCLMLALSLARVNVVIALTVSALVAGLVGGMDLHQTIDAFNTGLGGGAQIALS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH YALLGAFAVALSHSGLTTLISRSIISSLGQDPNPTNTNWVRWLLLLSLLVMSMASQNILP HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYMILPIGFGGIFLNDILLSNLT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SNGLAAVREQIPPAMLIPAAGMIVGLLTAVFISYRKPRIYDEAKVLVAEPEETLNKRNII CCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCHHH IAAVAILATLVVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE SAAGFAAVVKETGEVGTLVASLSDIIGDNKALAAFLMLLVGLLITMGIGSSFSTIPIIAT EHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH IYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGPTAGLNADGQHDHIRDSVIPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FIHYNIPLLVFGWIAAMVL HHHCCCHHHHHHHHHHHHC >Mature Secondary Structure MNAVVIAVCLMLALSLARVNVVIALTVSALVAGLVGGMDLHQTIDAFNTGLGGGAQIALS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHH YALLGAFAVALSHSGLTTLISRSIISSLGQDPNPTNTNWVRWLLLLSLLVMSMASQNILP HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYMILPIGFGGIFLNDILLSNLT HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC SNGLAAVREQIPPAMLIPAAGMIVGLLTAVFISYRKPRIYDEAKVLVAEPEETLNKRNII CCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHCHHH IAAVAILATLVVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFNQGVRMMANIGFIMI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE SAAGFAAVVKETGEVGTLVASLSDIIGDNKALAAFLMLLVGLLITMGIGSSFSTIPIIAT EHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH IYVPLALSFGFSVAATIALVGTAAALGDAGSPASDSTLGPTAGLNADGQHDHIRDSVIPT HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FIHYNIPLLVFGWIAAMVL HHHCCCHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739; 8021208 [H]