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The map label for this gene is rimM [H]

Identifier: 160874407

GI number: 160874407

Start: 1525953

End: 1526483

Strand: Direct

Name: rimM [H]

Synonym: Sbal195_1288

Alternate gene names: 160874407

Gene position: 1525953-1526483 (Clockwise)

Preceding gene: 160874406

Following gene: 160874408

Centisome position: 28.54

GC content: 45.76

Gene sequence:

>531_bases
ATGAGCAGTAACCAACAGCCAGTCGTACTGGGGAAATTAGGCTCCTGTCATGGCATTAAAGGTTGGCTGAAAATCACCGC
CTATACCGATTCTGTTGAAGGTATCTTTGACTACTCGCCTTGGCTTATTAAAGAAAATGGTGAGTGGCGCGAAATAAAGG
TCACCCAGTGGCGTTATCAAGGCAAGGCCGTTGTTGCTTTACTTGATGGCGTAGAAACACGGGAGCAAGCGCAAATGCTC
ACAAATTGTGAGATTGCGATTTTGCCGGAACAGATGAACGATTTGCCAGCAGATGAATTCTACTGGCGTGATCTCATCGG
TTGCGAAGTGGTCAATACAACTGGCTATAACATGGGAATTGTCGATCAGATCGTGGAAACAGGATCGAACGACGTATTAC
TCGTTAAAGCCAACGCTAAAGATAGTTTCGGCAAAGTGGAACGTATGATCCCCTTTGTCCCTGAGCAGTTCATCAAAACG
GTGGACCTGCAAGGTAAACAGATTTTAGTGGATTGGGATCCTGACTTCTAA

Upstream 100 bases:

>100_bases
AGCACTGGGTTTCTAACGGTGCAGCTGCTACAGAACGCGTAGCAAAATTGATCAAAGACGCTCGTAAAGCAACTGCTTAA
TAGCGTTAAGGTATAGATTG

Downstream 100 bases:

>100_bases
GTCGAGGTACAACAGATGTGGTTAGGGGTAATAACCCTGTTCCCAGAGATGTTCCGTGCCGTGACAGACTTTGGAGTTAC
GGGTCGAGCCGTGAAAAACG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQGKAVVALLDGVETREQAQML
TNCEIAILPEQMNDLPADEFYWRDLIGCEVVNTTGYNMGIVDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKT
VDLQGKQILVDWDPDF

Sequences:

>Translated_176_residues
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQGKAVVALLDGVETREQAQML
TNCEIAILPEQMNDLPADEFYWRDLIGCEVVNTTGYNMGIVDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKT
VDLQGKQILVDWDPDF
>Mature_175_residues
SSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQGKAVVALLDGVETREQAQMLT
NCEIAILPEQMNDLPADEFYWRDLIGCEVVNTTGYNMGIVDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTV
DLQGKQILVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=48.2352941176471, Blast_Score=191, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19932; Mature: 19801

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQ
CCCCCCCEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVALLDGVETREQAQMLTNCEIAILPEQMNDLPADEFYWRDLIGCEVVNTTGYNMGI
CCEEEEEECCCCCHHHHHHHHCCEEEEECHHHCCCCCCHHHHHHHCCEEEEECCCCCCCH
VDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTVDLQGKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCC
>Mature Secondary Structure 
SSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREIKVTQWRYQ
CCCCCCEEEECCCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVALLDGVETREQAQMLTNCEIAILPEQMNDLPADEFYWRDLIGCEVVNTTGYNMGI
CCEEEEEECCCCCHHHHHHHHCCEEEEECHHHCCCCCCHHHHHHHCCEEEEECCCCCCCH
VDQIVETGSNDVLLVKANAKDSFGKVERMIPFVPEQFIKTVDLQGKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]