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The map label for this gene is algU [H]

Identifier: 160874260

GI number: 160874260

Start: 1352144

End: 1352749

Strand: Direct

Name: algU [H]

Synonym: Sbal195_1140

Alternate gene names: 160874260

Gene position: 1352144-1352749 (Clockwise)

Preceding gene: 160874259

Following gene: 160874261

Centisome position: 25.29

GC content: 47.85

Gene sequence:

>606_bases
GTGGCATTAGCAATACCGCAATTACCAACCCATGAGCACTCAGATGAGCAATTGATGTTGTGCTATGCCAAGGGCGATTC
AAAAGCATTTGAGCAGTTATACCTGAAGCACAAAGGCGCGCTTTATCGCTACTTTGTGCGCCAGTTAGGTGATAAGCAGT
TAGCTGAGGATTTATATCAAGAAACTTGGGGACGGGTGATCCGCGTAGCGGCTAACTACGAGGCCAGTGCTAAGTTTACT
ACTTGGCTATATCGTATCGCCCATAACTTATTGATTGATCATGTGCGAGCGGTTAAGCCCGTCGATTTAGTCGCCACTGA
TGAGGACGAAACTGGGCTCGATACTTTTGTGGCGGGTGAGCAAGATAAGCCCGACGTGCAGTGGCAAGAAGCGCAAAAGA
GTTTATTGCTAAAGACCTGTATCGCACTGTTACCCCAAGTCCAGAAAGAGGCATTTATCCTGAACATTGAAATGGGTTTT
ACGGCTGCCATCATTAGCGACATTGCGGGCGTGACTTTAGAAGCGACTAAGAGCCGTATTCGCTACGCTTACCAAAGTCT
AAAGGATTGCGTTAGCGCGAAATGGCAGGAGGCGGGTCATGAGTAA

Upstream 100 bases:

>100_bases
CCATGGCGAGCCAATGAGAGATAAGAGCAATCCGCGTAATGAGAGATTACAATAGTAAAAGTGAATACAGGGGGTTAACC
CAAATGACGAGGAATTTCCC

Downstream 100 bases:

>100_bases
TTCATCTTCAAATGCCGATGAGCGCGCATTACAACAGGAAGTGCTGGCTTGGTATCGCCAACAAGCCTTAGAAGTTCCAC
CACAGCAACTCGATCAAGAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRVAANYEASAKFT
TWLYRIAHNLLIDHVRAVKPVDLVATDEDETGLDTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGF
TAAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEAGHE

Sequences:

>Translated_201_residues
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRVAANYEASAKFT
TWLYRIAHNLLIDHVRAVKPVDLVATDEDETGLDTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGF
TAAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEAGHE
>Mature_200_residues
ALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRVAANYEASAKFTT
WLYRIAHNLLIDHVRAVKPVDLVATDEDETGLDTFVAGEQDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFT
AAIISDIAGVTLEATKSRIRYAYQSLKDCVSAKWQEAGHE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22804; Mature: 22673

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRVAANYEASAKFTTWLYRIAHNLLIDHVRAVKPVDLVATDEDETGLDTFVAGE
HHHHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCCC
QDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAIISDIAGVTLEATKSRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHH
RYAYQSLKDCVSAKWQEAGHE
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALAIPQLPTHEHSDEQLMLCYAKGDSKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRVAANYEASAKFTTWLYRIAHNLLIDHVRAVKPVDLVATDEDETGLDTFVAGE
HHHHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCCC
QDKPDVQWQEAQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAIISDIAGVTLEATKSRI
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHH
RYAYQSLKDCVSAKWQEAGHE
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]