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The map label for this gene is cmpR [H]

Identifier: 160874050

GI number: 160874050

Start: 1097678

End: 1098676

Strand: Direct

Name: cmpR [H]

Synonym: Sbal195_0930

Alternate gene names: 160874050

Gene position: 1097678-1098676 (Clockwise)

Preceding gene: 160874048

Following gene: 160874053

Centisome position: 20.53

GC content: 50.65

Gene sequence:

>999_bases
ATGGATAAGCGTTCGTCATCGACTCAGCTTAAATTGCGGCACTTGAGTTTCCGTTTACTGCAGGTGTATGTGCAAGTGGT
GCGGTTAGGCAATATTTCCGCAGCGGCGAGGGCCTTGCATTTAACCCAACCCACAGTGTCATTACAGCTTAAAAAGCTAG
CCGATGTGTTAGGTGAACCGTTACTCGAGAGTCGTGATGGCCGCATGCTACCGACCTTGATTGGCAATGAACTCTACCGC
GCAGCCTGCGATACCTTGAGTCGTTTTGAGGATTTCGATGCCTTTATGCAGCAGGCTAAAGGTGGCAGCGTTGGGCATGT
CAATATTGGTATCGTCACTACCGCCAAATACGTATTACCACGGATTTTAGGGGCTTTTTATCGGCAGTTTCCGCAGGTTA
AAGTGACCTTAAACATAGGTAACCGTGCCCATGTGTTAGGCCGATTTGAGCGTCAAGAAGATGATTTATACCTGTTTAGT
CATCCTCCTAGTGGCGATAACGTGCTATCTGCGCGGATCATTAAAAACCCGCTGCAACTGATTGCGCCAAAGGATCATTG
GGCGGTGGGCCGTGAGCAAGTGAATTTTAACGATCTCAAAAATGAGCGTTTTATCGTGCGCGAGCCAGGTTCTGCCACCC
GTTTAATGTTCGAGTCTTGGTGCAGCGGTCAAGGCATCACGCTTAGTGACACTATGCAAATTGAGAGCAATGAGGCGATA
CGCCTAAGCGTCGCGTCGGGCTTAGGCTTGTCTGTGATTTCGGCGCACACGCTGCAAGAAGGGCGCGAAAAACCGGCTAT
TTTGCCGGTAACGGGTTTTCCGCTCGAAAGTAACTGGTATCTGGTTGGCCGCAAAGATCGCCGCTTGCCCTATGCTGCCA
TGCAGCTGGTGGACTTTATGGCGGCGCATTTGGCCGAGTGTATCGAGCCCGAATGGGTTGCCGCCGATATCAGTGAACTG
GCTATGCACTTTAATCATGTGCCGCAAACTCGGTCTTAG

Upstream 100 bases:

>100_bases
CAGGCTTAATTGTCGGGTGATCCTGATGGCTGGTGATTTTGGACCTAATTGGTTATATTGAAAAATAAATTGTTTACCAC
TTAGGTATAGATAATTGTCT

Downstream 100 bases:

>100_bases
CTGAGTTCATGTTTTTGATACTGAATGATTTTATTAAGTTAAAGATGTGGTGATACATTGAGGGTAACGTCTTTTAGCAC
ATCTTGTGCGTTACCCTCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHVNIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVNFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHVPQTRS

Sequences:

>Translated_332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHVNIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVNFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHVPQTRS
>Mature_332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHVNIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVNFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHVPQTRS

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=255, Percent_Identity=24.7058823529412, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=247, Percent_Identity=23.8866396761134, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=27.1604938271605, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=24.4, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=23.7885462555066, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=23.4615384615385, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=22.0689655172414, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=285, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=23.3676975945017, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=23.8095238095238, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37170; Mature: 37170

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCCH
LLESRDGRMLPTLIGNELYRAACDTLSRFEDFDAFMQQAKGGSVGHVNIGIVTTAKYVLP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHH
RILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQL
HHHHHHHHHCCCEEEEEEECCCEEEHECCCCCCCCEEEEECCCCCCCEEHHHHHHCHHHH
IAPKDHWAVGREQVNFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
CCCCCHHHCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECEEEECCCCEE
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFM
EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
AAHLAECIEPEWVAADISELAMHFNHVPQTRS
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCCH
LLESRDGRMLPTLIGNELYRAACDTLSRFEDFDAFMQQAKGGSVGHVNIGIVTTAKYVLP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHH
RILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQL
HHHHHHHHHCCCEEEEEEECCCEEEHECCCCCCCCEEEEECCCCCCCEEHHHHHHCHHHH
IAPKDHWAVGREQVNFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
CCCCCHHHCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECEEEECCCCEE
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFM
EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
AAHLAECIEPEWVAADISELAMHFNHVPQTRS
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]