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The map label for this gene is ydaM [H]

Identifier: 160873975

GI number: 160873975

Start: 1006684

End: 1008207

Strand: Direct

Name: ydaM [H]

Synonym: Sbal195_0854

Alternate gene names: 160873975

Gene position: 1006684-1008207 (Clockwise)

Preceding gene: 160873972

Following gene: 160873976

Centisome position: 18.83

GC content: 44.23

Gene sequence:

>1524_bases
ATGCGGTTTTCACGTATACACTTTTTTTACATTCCCCATCGAGCGTCTGCTTTTAGGTTGAAACTATCAATGGAATTGCG
TGGCTTATTGAGGTTATTGCCGCTATTGATTTGTACGCCATTACTGGCTCATGCCGACCGTTTAGCGATGGCGAATGCTA
AGCTTGCTAGCCAAGACGTTAGCGTTAGCATAACTCAGATAGTCCGTTATTGTGTTGATCCTGACTGGTTACCCTATGAA
GGAATCCGAGAGGGTAAACATCTGGGGATTTCATCAGATTATATTGATTATATCGAATCGCATTCCTCCCTTAAGTTTCA
GCTGGTGTCGACTTCCTCTTGGACCGAGACCTTATCTTTTTTGCAAAGCGGGCAGTGTGATTTAACCCCTATGCTGAATA
AAACCCTGATACGAGAGACTTATCTGCACTTCAGTGATGTCTATTTCCGCTCTCCTAATGTATTAGTGTCACTTAAAGAT
CAGCCTTTCTTGCAAGGATTTGAGAATATTGGCGCGCGTACTTTAGCCGTGCCAAAAGGTTATCGTTTAGCCGAATATAT
TCAGCATTATTATCCTCAAATTGAGACGCTTACTGTGGCCAGTGAGCCAGCAGGATTGCAGTCGGTGCTGGATAAACGTG
CCGATCTGTTTGTGGGATCGATGTTTTCGGTTAACTCCTACATCCAACAAACTGGATTTAATCATTTGAAAATAGCTGGT
TGGGGCGGACCAGAAGATGAGTTGCGGATGGGGGTTGCCTATGGTCAAGAGTCCTTGTTACCTGTGATAAATAAGGCCTT
AAATGCTGTGAGTGAGCAAGAGCGGATCACGATTTACCAGAAGTGGAATAATGTGACTGTCATAGATGAGACTAACTATT
CGCTTGTTTATCAAGTTATCTGCGCGACGTGTTTGTTATTACTAATTTTGGGGGCAAGAACTTACTTTATCAGCCAGTAT
AACCGTAGACTCACCGATAAGAATCAGCAGCTCGAAACCTTACGACAGCAGCTCGAGGCTTCAAATGCCGAACTCGAGTT
TTTATCTACCCATGATCCCCTGACCAAGTTGTATAACCGACATTACTTTAATCGCCTGTTTATTAATAATGAGCAGCATG
ATCAATCTGCTAAAGCAGGCATGTGCTTGGTGATGATTGATATCGATTACTTTAAAGAGATTAATGACACGCTAGGGCAT
AACGTCGGGGATCGGATCCTTGAGCAAGTGTCGCAGGTGCTACAGCACTGTGTGCGTGAATCTGATGTGGTTGCACGTTG
GGGCGGCGAAGAGTTTGTGATCCTCTGCCAGCAGTCATCCTTACCCTTAGTTGAAAGCTTGTGTGTGCGGATAGCTGAGA
GGATCAAACATTATCAATTTACTGACAATGTGCAGTTAACCTGCAGTTTTGGCGTCGCTAAGCTTGCCGATAACGAACCT
ATGATGTTGTGCTTTGAACGTGCCGATCGCGCACTTTATCGTGCTAAAGCGCAAGGGCGTAATCAAATGTGCACCGACAA
ATAA

Upstream 100 bases:

>100_bases
TATACACCCCTTATTGCGTCGCGCAGGCACATATTTCAGCGTTTTGAGCCGACTATTGATAAATAACCGCTACACACTCG
TAATGATGGGAATTGGTATT

Downstream 100 bases:

>100_bases
GTATTTACGCAAGCGTGATTTGCCGTTATCTGAGCAAATGGCTTCCACTCAGTTGAATCAATGATGTCATCTTTATTTTA
AAGAAAGGATTAGCATTATT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 507

Protein sequence:

>507_residues
MRFSRIHFFYIPHRASAFRLKLSMELRGLLRLLPLLICTPLLAHADRLAMANAKLASQDVSVSITQIVRYCVDPDWLPYE
GIREGKHLGISSDYIDYIESHSSLKFQLVSTSSWTETLSFLQSGQCDLTPMLNKTLIRETYLHFSDVYFRSPNVLVSLKD
QPFLQGFENIGARTLAVPKGYRLAEYIQHYYPQIETLTVASEPAGLQSVLDKRADLFVGSMFSVNSYIQQTGFNHLKIAG
WGGPEDELRMGVAYGQESLLPVINKALNAVSEQERITIYQKWNNVTVIDETNYSLVYQVICATCLLLLILGARTYFISQY
NRRLTDKNQQLETLRQQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDQSAKAGMCLVMIDIDYFKEINDTLGH
NVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKHYQFTDNVQLTCSFGVAKLADNEP
MMLCFERADRALYRAKAQGRNQMCTDK

Sequences:

>Translated_507_residues
MRFSRIHFFYIPHRASAFRLKLSMELRGLLRLLPLLICTPLLAHADRLAMANAKLASQDVSVSITQIVRYCVDPDWLPYE
GIREGKHLGISSDYIDYIESHSSLKFQLVSTSSWTETLSFLQSGQCDLTPMLNKTLIRETYLHFSDVYFRSPNVLVSLKD
QPFLQGFENIGARTLAVPKGYRLAEYIQHYYPQIETLTVASEPAGLQSVLDKRADLFVGSMFSVNSYIQQTGFNHLKIAG
WGGPEDELRMGVAYGQESLLPVINKALNAVSEQERITIYQKWNNVTVIDETNYSLVYQVICATCLLLLILGARTYFISQY
NRRLTDKNQQLETLRQQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDQSAKAGMCLVMIDIDYFKEINDTLGH
NVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKHYQFTDNVQLTCSFGVAKLADNEP
MMLCFERADRALYRAKAQGRNQMCTDK
>Mature_507_residues
MRFSRIHFFYIPHRASAFRLKLSMELRGLLRLLPLLICTPLLAHADRLAMANAKLASQDVSVSITQIVRYCVDPDWLPYE
GIREGKHLGISSDYIDYIESHSSLKFQLVSTSSWTETLSFLQSGQCDLTPMLNKTLIRETYLHFSDVYFRSPNVLVSLKD
QPFLQGFENIGARTLAVPKGYRLAEYIQHYYPQIETLTVASEPAGLQSVLDKRADLFVGSMFSVNSYIQQTGFNHLKIAG
WGGPEDELRMGVAYGQESLLPVINKALNAVSEQERITIYQKWNNVTVIDETNYSLVYQVICATCLLLLILGARTYFISQY
NRRLTDKNQQLETLRQQLEASNAELEFLSTHDPLTKLYNRHYFNRLFINNEQHDQSAKAGMCLVMIDIDYFKEINDTLGH
NVGDRILEQVSQVLQHCVRESDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKHYQFTDNVQLTCSFGVAKLADNEP
MMLCFERADRALYRAKAQGRNQMCTDK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=160, Percent_Identity=37.5, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=38.125, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=34.6590909090909, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=233, Percent_Identity=29.6137339055794, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=32.2981366459627, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=33.1288343558282, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1788085, Length=176, Percent_Identity=30.1136363636364, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788381, Length=166, Percent_Identity=30.7228915662651, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788956, Length=190, Percent_Identity=32.1052631578947, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=31.7647058823529, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=31.9277108433735, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788713, Length=251, Percent_Identity=25.4980079681275, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=30.4093567251462, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 58050; Mature: 58050

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSRIHFFYIPHRASAFRLKLSMELRGLLRLLPLLICTPLLAHADRLAMANAKLASQDV
CCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
SVSITQIVRYCVDPDWLPYEGIREGKHLGISSDYIDYIESHSSLKFQLVSTSSWTETLSF
EEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHH
LQSGQCDLTPMLNKTLIRETYLHFSDVYFRSPNVLVSLKDQPFLQGFENIGARTLAVPKG
HHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHCCCEEEECCCC
YRLAEYIQHYYPQIETLTVASEPAGLQSVLDKRADLFVGSMFSVNSYIQQTGFNHLKIAG
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
WGGPEDELRMGVAYGQESLLPVINKALNAVSEQERITIYQKWNNVTVIDETNYSLVYQVI
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHH
CATCLLLLILGARTYFISQYNRRLTDKNQQLETLRQQLEASNAELEFLSTHDPLTKLYNR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
HYFNRLFINNEQHDQSAKAGMCLVMIDIDYFKEINDTLGHNVGDRILEQVSQVLQHCVRE
HHHHHEEECCCCCCCHHCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
SDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKHYQFTDNVQLTCSFGVAKLADNEP
CCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEECCCEEEEEECCCHHHCCCCC
MMLCFERADRALYRAKAQGRNQMCTDK
CEEHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRFSRIHFFYIPHRASAFRLKLSMELRGLLRLLPLLICTPLLAHADRLAMANAKLASQDV
CCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
SVSITQIVRYCVDPDWLPYEGIREGKHLGISSDYIDYIESHSSLKFQLVSTSSWTETLSF
EEEHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHH
LQSGQCDLTPMLNKTLIRETYLHFSDVYFRSPNVLVSLKDQPFLQGFENIGARTLAVPKG
HHCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCHHHHHHHHCCCEEEECCCC
YRLAEYIQHYYPQIETLTVASEPAGLQSVLDKRADLFVGSMFSVNSYIQQTGFNHLKIAG
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
WGGPEDELRMGVAYGQESLLPVINKALNAVSEQERITIYQKWNNVTVIDETNYSLVYQVI
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHH
CATCLLLLILGARTYFISQYNRRLTDKNQQLETLRQQLEASNAELEFLSTHDPLTKLYNR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
HYFNRLFINNEQHDQSAKAGMCLVMIDIDYFKEINDTLGHNVGDRILEQVSQVLQHCVRE
HHHHHEEECCCCCCCHHCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
SDVVARWGGEEFVILCQQSSLPLVESLCVRIAERIKHYQFTDNVQLTCSFGVAKLADNEP
CCEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEECCCEEEEEECCCHHHCCCCC
MMLCFERADRALYRAKAQGRNQMCTDK
CEEHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]