Click here to switch to the map view.

The map label for this gene is prtR [H]

Identifier: 160873890

GI number: 160873890

Start: 913214

End: 913936

Strand: Reverse

Name: prtR [H]

Synonym: Sbal195_0768

Alternate gene names: 160873890

Gene position: 913936-913214 (Counterclockwise)

Preceding gene: 160873917

Following gene: 160873889

Centisome position: 17.09

GC content: 46.89

Gene sequence:

>723_bases
ATGTCAACAAAAGATAAGATCACTTACATGAAAACACTCGGTCAACGCATACGCGAAAAGCGTAAAGAATTAGGTATCAC
CCAAAAAGCACTTGGTGCTTTAGTTGGGGTTTCTGCTGTTGCAGTAACTCAGTGGGAAAAAGATGAGACCGCCCCAAAAG
GCGCAAATTTATTTGCTCTAGCGAAATCATTGAAATGTGATCTCAGCTGGCTTCTAAATGGACAAGTCGCTGCGAAACCT
GAATCGAATGCAGAATGGGCAGGCGGTTTTGACCTATGGGACAACGATAGTCCATTAGGTGAGGATGAAGTTGAAATCCC
CTTTTACGTGGATATTGAACTCTCGGCAGGCGAAGGCATTGCAGAAGGTGTTGAGTATAAAGGCCCTAAGCTACGTTTTG
CCAAAAGCAGCCTGAAGCGCCAAGGTGTAAACACAGATCATGCGGCCTGTGTCAAAGTGAATGGCAACAGCATGGAACCT
GTATTACCCCACGGCTCAACTGTGGGTGTCGATACCTCCGCCACCGAAATCATCGACGGTAAAATGTACGCCATTAACCA
CGATGGCATGATGCGCGTCAAAATGCTCTACAAACTCCCCGGTGGTGGCTTGCGCCTACGCAGCTACAACCTGGACGAAT
GGCCAGACGAACATATAAGCCATGAGCAGTTAAAACACATCAAAATCATCGGCAAAGTGTTTTGGTACTCAGTGCTGACA
TGA

Upstream 100 bases:

>100_bases
GTTTGAGAACCATAAAATTTGACGGCATCATCTTTTGTCATGGGTTGATCTCCACACTGAACAAATAAGTTTTCTTACAC
AATAGAAAGAAAGGAAACTT

Downstream 100 bases:

>100_bases
AATATAAACTCGGTAAATAAATTAGTTTATTAACCATTCAAAAAACGGATTAAGCAGATAATTAAGGATAATTATATGAC
ACATAAATTAGAAGGAAACT

Product: putative phage repressor

Products: NA

Alternate protein names: Pyocin repressor protein [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLLNGQVAAKP
ESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIAEGVEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEP
VLPHGSTVGVDTSATEIIDGKMYAINHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYSVLT

Sequences:

>Translated_240_residues
MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLLNGQVAAKP
ESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIAEGVEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEP
VLPHGSTVGVDTSATEIIDGKMYAINHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYSVLT
>Mature_239_residues
STKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLLNGQVAAKPE
SNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGIAEGVEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPV
LPHGSTVGVDTSATEIIDGKMYAINHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYSVLT

Specific function: Represses the promoter activity of the prtN gene [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787853, Length=74, Percent_Identity=43.2432432432432, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26476; Mature: 26344

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHH
AKSLKCDLSWLLNGQVAAKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGI
HHHHHCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEECCCCCC
AEGVEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIIDG
CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCHHHEECC
KMYAINHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYSVLT
EEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STKDKITYMKTLGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFAL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHH
AKSLKCDLSWLLNGQVAAKPESNAEWAGGFDLWDNDSPLGEDEVEIPFYVDIELSAGEGI
HHHHHCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEECCCCCC
AEGVEYKGPKLRFAKSSLKRQGVNTDHAACVKVNGNSMEPVLPHGSTVGVDTSATEIIDG
CCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEECCCCCHHHEECC
KMYAINHDGMMRVKMLYKLPGGGLRLRSYNLDEWPDEHISHEQLKHIKIIGKVFWYSVLT
EEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444788; 10984043 [H]