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The map label for this gene is ybfI [H]

Identifier: 160873820

GI number: 160873820

Start: 846706

End: 847548

Strand: Direct

Name: ybfI [H]

Synonym: Sbal195_0698

Alternate gene names: 160873820

Gene position: 846706-847548 (Clockwise)

Preceding gene: 160873819

Following gene: 160873821

Centisome position: 15.83

GC content: 46.98

Gene sequence:

>843_bases
ATGAGTACAGCAACACCCATTGAAAACATTAACTACTGGCGCCATCCCAGCTTATCAGGCATAGAACTGAGTCAGGCGGA
ATTCACTCATTTCAGCTTTGATAAACATGTGCATCTGGATTACCACTTAGGTGTGGTCACCCAAGGTGCGCAGCAGTTTG
TGAATAAGGGCAGCAGTTATCAACTCGGTCAGCACAGTTTATCGACCTTAAATCCCGATGAAACCCACGATGGCCAGAGC
CGCGATGCCGACGGTTATCGGGTGAAAGTCATGTCTATCCCCGTGGAATACATGAATGAAGTCAGCCAAGAACTGGGGTT
GAAGGAGCACTTTTTCAACGCGCCTATGGTGGATGACCCAACGCTTTATCAATATTTTATTCAGCTACACGAACTATTAA
TCCAAGGCCAATGCAGTGCACTCGCGGGCGAGTCCCACTTACTGAACTTTATTCATCTGCTGCTGGAGCGTTACCCCAGC
GGCGTTTCATCTTGCATCACTAAGCCGAATCAACCGCAGGGGCTATCTAAGTTGCAGGTGAGCTTAGTCAAGCAGCGAAT
TCACGATGAGCCTTGGCATAATACTCAGCTTGAAACCTTAGCCAATGAAGTGAGCTTAAGTAAGTTTCAGTTTTTACGGC
AATTTAAACAGGCAACAGGGATGACACCCCATGCTTATCTCAAGCGGGTGCGTTTAGAGTTAGCGAAAAAATCCTTAAGT
CATGGCGCTCTAGTGGCGGATGTGGCGCAGCAATTCGGATTTTTTGACCAGAGCCATTTAAATAAAGCCTTTAAGCAGGC
ATTCCTATTATCGCCAGTGCAATTTCAGCGACGTATGCTCTAG

Upstream 100 bases:

>100_bases
TAATTTACTATTCCCGCGTTGACGATGAAGGCTAGAATGAACCTTAGTGGATTTGAGTTCCCAGTTTTGCAACTGATGTA
ATAGGTAATAGCCGCGAGCG

Downstream 100 bases:

>100_bases
TTTTCCCCCGTCTTTCGACGATTGCTGCAGAGTTGAAGATTGCAGCTTTTAAAGCCGTTACTTAAAACCGTTATTTCGAA
AACGGTTGCTTCTAAAGTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSTATPIENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQS
RDADGYRVKVMSIPVEYMNEVSQELGLKEHFFNAPMVDDPTLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPS
GVSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML

Sequences:

>Translated_280_residues
MSTATPIENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQS
RDADGYRVKVMSIPVEYMNEVSQELGLKEHFFNAPMVDDPTLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPS
GVSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
>Mature_279_residues
STATPIENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQSR
DADGYRVKVMSIPVEYMNEVSQELGLKEHFFNAPMVDDPTLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSG
VSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLSH
GALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31908; Mature: 31776

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTATPIENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSY
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
QLGQHSLSTLNPDETHDGQSRDADGYRVKVMSIPVEYMNEVSQELGLKEHFFNAPMVDDP
CCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCCCCCCH
TLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSGVSSCITKPNQPQGLSKLQV
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHH
SLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
STATPIENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
QLGQHSLSTLNPDETHDGQSRDADGYRVKVMSIPVEYMNEVSQELGLKEHFFNAPMVDDP
CCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCCCCCCH
TLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSGVSSCITKPNQPQGLSKLQV
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHH
SLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]