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The map label for this gene is yciR [C]

Identifier: 160873815

GI number: 160873815

Start: 838794

End: 840788

Strand: Reverse

Name: yciR [C]

Synonym: Sbal195_0693

Alternate gene names: 160873815

Gene position: 840788-838794 (Counterclockwise)

Preceding gene: 160873816

Following gene: 160873812

Centisome position: 15.72

GC content: 47.17

Gene sequence:

>1995_bases
ATGGGGACTCAGTTCGCGCGCACATTAGCTATTTTACGGCAACGAACTCGCTCAACGGTTGCTAAGGTTCTGTTGATCAT
CAGCATGTTTATCGGGATTTGTATCGCCCTCGTCGGCCTAGTGTATATTCAAGGCAATATATTTGATGGTGTACGCACCT
ATGTCCGCGGTGAAGGCTTGTGGGCCAAGGCGCAAAAAGATGCGGTACTTTATCTCACCCATTACTCTTATACCCAAAAT
GATGTGGACTTTCAGCGTTATCGTGCAGCGACGAGCGTTATGGAAGGTGATCATCAAGCTAGGCAAGCCCTGCTCGCAAC
GCCAATCGATGAACAGGCCGCCAAACTGGGTTTTATTCAGGGCCTCAATGACGAACGGGATACCGACTCACTGATCTGGT
TCTTCCGTCACTTTCAATCCAATTCCTATATGCGGCAAGCGATTCAGCTGTGGGGCTTAGCGGATCAACGCTTCGAGTTT
GTAATGCAACTCGCCGAGAATATGCGTATTGAAATCAATCAACTGGGTGGCAGGCCCGAAATCCTCGCGCAATACCGCCA
GCAATTGATTGATGTAAATGAAGAATTACTCAGCCTAGAAATTGAATTTTCAGCTGTGCTCAGTGAAGGTGCACGATGGG
TCAAGCAAATGACCTGGTTGATTAGCCTTGGCGCCCTACTGCTGTTTATTAGTATTGGGATCTTCGCCAGTCGGCAGATC
ATTCGTAACATCGCCAAATCTGAACGGCAGTTACTGATCAGTGAATCTCGCTTCACTAGCCTGAAAAACTCCGACACCAT
AGGGATTATTTCATGGCAGCTTGATGGCACCATCCATGATGCTAATGATCATTTCCTCAAGATGCTCAATTTTGACCGCG
CGGATTTAACCTCAGGCTTAATCAACTGGCGCTCAATTACCCCACCAGAATATGAAACACGAGATGCCATTGCGATTGCA
GAGTTAGAACAGTTTGGTCACTGCCAACAATATGAAAAACAACTTATCAGCAAGAGTGGTGCCTTAGTGCCTGTGATGTT
AGCGGCCAGTTTTTTAAATGGCAGCAAATGTGAAGGCGTGGCTTACTTTATGGATCTCACCGCCAGTAAACAGGCCGAAG
ATAAACTCAGGCTCGCGGCAACCGTGTTTAATGCCAGCACCGACGGCATAATGATCACCGATCCCCTGCTGAGTATTATT
TCTATCAATCAAGCCTTTACTCATATAACTGGCTTTACCCAGCAGGATTTGCACGGCGATGCCAACCACTTCCTCAATGA
CGGGCACAATAGTGATGACGCCCGCCAAGCCATGCTAAATCTGCTACAACAGGGCGAACAATGGCAGGGGGAATTACTCA
AACAAGTTAAATCGGGCGACTTACTGCCACTCAGTGTGCGCATCAATACAGTGCGCAATGAGCATGACCGCCTGACTCAT
TTTGTCATTGTGATTACCGACATTGCCGAACGCAAGGCAGAGGAGGAATATCTGCGTCATATCGCCCATCACGATGCCCT
GACTAACCTGCCTAATCGTGTGTTATTCCACACTAAACTTGAACAAGCCATAGTGCACGCCCAACGGTCTGATGATATTT
TTGCAATCCTTTTCTTAGACTTAGATAACTTTAAGCCAGTGAATGACCAGTTTGGTCACGATGTGGGAGATAAACTATTA
CAGGAAGTCGCGAAACGGCTTTCATCTGGGATTCGCCAAATGGATACCATCACTCGCCTCGGAGGCGATGAGTTTGTGAT
CCTGCTAGAACACCTTGCCAATACCCACAGAATCGGCCAACTGATCCCTCAGATAAGCCAAGCTATTTGCGCGCCTTACA
CTATCAATGGTCATCAAATCCATATCGGTGTCAGCGTCGGTTTGGCGATTTATCCAGAAAACGGCACAGATGCAAAAAGC
CTGATCAATCATGCTGATCAGGCCATGTATTCGATGAAAAAAACCAATAAGACTCACCTGCAAAGCCTAGGTTAA

Upstream 100 bases:

>100_bases
ACAAAATAACCTTCAAAAATAGCAGGCAAATTGATTCACTCCTTCTCCCTAAGCTGCCCACTCTAGAGTGGCGCCACTGT
ATTGGTTGTGGAGCGTAAGG

Downstream 100 bases:

>100_bases
GCCTTACTGGCTGGCGAGTTTACGCCAACGTAATCCATCACGAATCACCTCATACCCAGGGAACATAGCGGCAATCACTA
GACTATAACTGAGCCATTTA

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 664; Mature: 663

Protein sequence:

>664_residues
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQN
DVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEF
VMQLAENMRIEINQLGGRPEILAQYRQQLIDVNEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTIHDANDHFLKMLNFDRADLTSGLINWRSITPPEYETRDAIAIA
ELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKCEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLSII
SINQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLL
QEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKS
LINHADQAMYSMKKTNKTHLQSLG

Sequences:

>Translated_664_residues
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQN
DVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEF
VMQLAENMRIEINQLGGRPEILAQYRQQLIDVNEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTIHDANDHFLKMLNFDRADLTSGLINWRSITPPEYETRDAIAIA
ELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKCEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLSII
SINQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLL
QEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKS
LINHADQAMYSMKKTNKTHLQSLG
>Mature_663_residues
GTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGLWAKAQKDAVLYLTHYSYTQND
VDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQGLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFV
MQLAENMRIEINQLGGRPEILAQYRQQLIDVNEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQII
RNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTIHDANDHFLKMLNFDRADLTSGLINWRSITPPEYETRDAIAIAE
LEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKCEGVAYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLSIIS
INQAFTHITGFTQQDLHGDANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTHF
VIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLDLDNFKPVNDQFGHDVGDKLLQ
EVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQLIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSL
INHADQAMYSMKKTNKTHLQSLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=285, Percent_Identity=30.1754385964912, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788381, Length=421, Percent_Identity=25.6532066508314, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=33.1460674157303, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=31.5151515151515, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=37.012987012987, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=27.906976744186, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=32.0512820512821, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=31.3253012048193, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=33.5443037974684, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1788085, Length=92, Percent_Identity=35.8695652173913, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74894; Mature: 74762

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDAVLYLTHYSYTQNDVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQ
EEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
GLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFVMQLAENMRIEINQLGGRPE
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCHH
ILAQYRQQLIDVNEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
HHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTIHDANDHFLKMLNFDRADLTSGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCHHHHHHHH
INWRSITPPEYETRDAIAIAELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKCEGV
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCE
AYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLSIISINQAFTHITGFTQQDLHGD
EEEEECCCCCCHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCC
ANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHEE
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
LDNFKPVNDQFGHDVGDKLLQEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQ
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSLINHADQAMYSMKKTNKTHL
HHHHHHHHHCCCEEECCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHH
QSLG
HCCC
>Mature Secondary Structure 
GTQFARTLAILRQRTRSTVAKVLLIISMFIGICIALVGLVYIQGNIFDGVRTYVRGEGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDAVLYLTHYSYTQNDVDFQRYRAATSVMEGDHQARQALLATPIDEQAAKLGFIQ
EEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
GLNDERDTDSLIWFFRHFQSNSYMRQAIQLWGLADQRFEFVMQLAENMRIEINQLGGRPE
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCHH
ILAQYRQQLIDVNEELLSLEIEFSAVLSEGARWVKQMTWLISLGALLLFISIGIFASRQI
HHHHHHHHHHCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSERQLLISESRFTSLKNSDTIGIISWQLDGTIHDANDHFLKMLNFDRADLTSGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCHHHHHHHCCCHHHHHHHH
INWRSITPPEYETRDAIAIAELEQFGHCQQYEKQLISKSGALVPVMLAASFLNGSKCEGV
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCE
AYFMDLTASKQAEDKLRLAATVFNASTDGIMITDPLLSIISINQAFTHITGFTQQDLHGD
EEEEECCCCCCHHHHHHHHHHEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHCCCC
ANHFLNDGHNSDDARQAMLNLLQQGEQWQGELLKQVKSGDLLPLSVRINTVRNEHDRLTH
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHEE
FVIVITDIAERKAEEEYLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDDIFAILFLD
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEE
LDNFKPVNDQFGHDVGDKLLQEVAKRLSSGIRQMDTITRLGGDEFVILLEHLANTHRIGQ
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LIPQISQAICAPYTINGHQIHIGVSVGLAIYPENGTDAKSLINHADQAMYSMKKTNKTHL
HHHHHHHHHCCCEEECCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHH
QSLG
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]