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The map label for this gene is ycaN [H]

Identifier: 160873791

GI number: 160873791

Start: 816003

End: 816992

Strand: Direct

Name: ycaN [H]

Synonym: Sbal195_0669

Alternate gene names: 160873791

Gene position: 816003-816992 (Clockwise)

Preceding gene: 160873787

Following gene: 160873793

Centisome position: 15.26

GC content: 45.56

Gene sequence:

>990_bases
ATGAAGACAGAGGACTTAGCGTTATTCCACCGAATTGCTGAAACCGGTAGTTTGATTGAAGCGGCGGATTTACTTAACTT
GCCAAAATCGACTGTCAGTCGGCGTTTACAAGCTTTGGAAGATGAGCTGAACATTAAATTGTTCCACCGTCAGAGCCGCT
CTATGACGCTCACTTCTGCGGGCAGTCATTTTTACCAGCGCTCGCAGAATATTTTGGCTCAGCTCGACGAAACCCTATTC
GAAATGACCAATGACGATGCTGAGATCAGCGGGCATTTGCGCATTCAAATGTTCCCCATCCACAGCATGAAAATCTTGAT
GCAGGCCATTTTCCGCTTTATGGATATGCACCCTAAACTCACCTTAGAAGTCATCAGCAGTTCAGAATCCGTTGATATGG
TGAAACATAATCTCGATGTGGCTTTTGTGGTCGAGCCTGCGTTGGATACCTTAGATTTAGTAGTGCGGCCGATTTTTACT
ACTGACTTACGTTTTTACGCGAGTCCGCAATATTTAGCGGCACACGGTACACCTAAAACACCGAAAGAGATTGAAGCACA
TAATGTGTCTATGTTCCGTTTATCCAACGGCAAAATCTTTAATGAGTTATTTATCGGTTCAGAACAAGAGGTGAGAGTCA
GAGGTAATTTCTGCTCCAACAGTATTGAAGTGGCGGTTGAGTTTGGATTGCAAGGACGCGGTATCGTGTATGCACCTTCT
GAAGTCGTTGCCGAATATGTGGAAACTGGTGAGTTAGTGACCTTATTACCTGAAATCCAACCCCACCAAGGTGAGTGCTT
CTTAGCTTATCCATCAAGACGTTACGTAAGTTTAGCCAGTCGGCGCTTTATCGACTATATCATGCAAGAGTTAGTGCCAA
ACGGGGTGCCGACTAATATGAGTGAGCAAGGCCCACGTCGATCCTGCAAAGCCTCTACGGGAGCGTTTTCAGACGACGTG
TTGCGCTTTCCCGTTAAAAAATCAAGCTAG

Upstream 100 bases:

>100_bases
CAGCATTTCTGGGCGCGAAGATACCAGCTAAATTAGTTGCAATAAACGGGATACTTTGGGATTATCAGTCCCACATAATG
AGATTGAACTTAAGGTCAAA

Downstream 100 bases:

>100_bases
CTTACCCCTCGCTAATGGCGTTTGCGGTCGTGATCTTTGTGGGCTCACAGATCCGCTGCGCCAGCCAATAACAGGCAATT
CCCATCAAAATATTGGTCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFYQRSQNILAQLDETLF
EMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFT
TDLRFYASPQYLAAHGTPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAVEFGLQGRGIVYAPS
EVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQELVPNGVPTNMSEQGPRRSCKASTGAFSDDV
LRFPVKKSS

Sequences:

>Translated_329_residues
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFYQRSQNILAQLDETLF
EMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFT
TDLRFYASPQYLAAHGTPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAVEFGLQGRGIVYAPS
EVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQELVPNGVPTNMSEQGPRRSCKASTGAFSDDV
LRFPVKKSS
>Mature_329_residues
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSAGSHFYQRSQNILAQLDETLF
EMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKLTLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFT
TDLRFYASPQYLAAHGTPKTPKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAVEFGLQGRGIVYAPS
EVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQELVPNGVPTNMSEQGPRRSCKASTGAFSDDV
LRFPVKKSS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=30.5841924398625, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=31.3993174061433, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=29.1946308724832, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=25.085910652921, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=26.0869565217391, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=25.8620689655172, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=26.3157894736842, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693105, Length=117, Percent_Identity=29.9145299145299, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=29.6, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=25.503355704698, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=27.906976744186, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789173, Length=251, Percent_Identity=23.5059760956175, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788297, Length=149, Percent_Identity=28.1879194630872, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37121; Mature: 37121

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEECC
GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEECCHHHHHHHHHHHHHHCCCCCE
TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKT
EEEEECCCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCC
PKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAVEFGLQGRGIVYAPS
CCHHHHCCEEEEEECCCCEEHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEECCH
EVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQELVPNGVPTNM
HHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
SEQGPRRSCKASTGAFSDDVLRFPVKKSS
CCCCCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MKTEDLALFHRIAETGSLIEAADLLNLPKSTVSRRLQALEDELNIKLFHRQSRSMTLTSA
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEECC
GSHFYQRSQNILAQLDETLFEMTNDDAEISGHLRIQMFPIHSMKILMQAIFRFMDMHPKL
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECEEEEEEECCHHHHHHHHHHHHHHCCCCCE
TLEVISSSESVDMVKHNLDVAFVVEPALDTLDLVVRPIFTTDLRFYASPQYLAAHGTPKT
EEEEECCCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCC
PKEIEAHNVSMFRLSNGKIFNELFIGSEQEVRVRGNFCSNSIEVAVEFGLQGRGIVYAPS
CCHHHHCCEEEEEECCCCEEHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEECCH
EVVAEYVETGELVTLLPEIQPHQGECFLAYPSRRYVSLASRRFIDYIMQELVPNGVPTNM
HHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
SEQGPRRSCKASTGAFSDDVLRFPVKKSS
CCCCCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]