| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is rhsE [C]
Identifier: 160873726
GI number: 160873726
Start: 719407
End: 722271
Strand: Direct
Name: rhsE [C]
Synonym: Sbal195_0604
Alternate gene names: 160873726
Gene position: 719407-722271 (Clockwise)
Preceding gene: 160873725
Following gene: 160873727
Centisome position: 13.45
GC content: 53.79
Gene sequence:
>2865_bases ATGAGCACATCGTTGTTCAGCAAAACCCCGACGGTCAAGGTCCTTGATAACCGCGGCCTGATCGTGCGCGATATCGCGTA TCATCGCCATCCCGGCTCCCCGGACGTTACCAGTGAGCGCATTACACGCCATCAGTACGATGCCCGTGGCTTTCTGACGC AGAGTGCTGACCCGCGCCTGCACGATGCCGGACTGGTGAATTTCACGTATCTTACGGGCCTGGCCGGCAACGTTCTGTGC TCGCAGGGTGTGGATAACGGCATCACTGTGGTGCTGAACGACGCTGCAGGTCGACCTTTTATCGCAGTCAGCAATATCAG CACTGCCAGTGATGGCACGGAGGACAGAAGTCAGGCGGTAACCCGCACCTGGCAGTATGAGGATGTAGAACTGCCTGGGC GTCTGGTGAGCGTGACCGAGCAGGCCACCGGTGAAGCCGCCCGTGTCACGGAGCGCTTCATGTATGCTGCCAATACTGCC GCAGAGAAGGCGCTGAACCTGGCCGGTGCGTGCGTCTGCCATTACGACACGGCAGGCCTGACCCAGACGGACAGCGTGGC GCTGACCGGCGTGCCGCTCTCGGTTACCCGCCGCCTGCTGAAGGATGCGGAAAATCCCGATGTGGTGACCGACTGGCAGG GCACCGACGCTTCTGCTTGGAACGACATGCTGGCTGGCGAAACGTACACCACCCTGACCACGGCTGACGCCACCGGCGCA GTGTTGACCACCACCGACGCAAGAGGCAATACGCAGCGGGTGGCGTATGACGTGTCGGGCCTGCTGTCGGGCAGCTGGCT GACGATGAAAGGTGGCACGGAGCAGGTTATCGTCGCCTCCCTAACGTACTCCGCCGCCGGGCAGAAGCTGCGCGAGGTAC ACGGCAACGGCGTGGTGACCACGTATGAATACGAGCCAGAAACGCAGCGCCTGTCCTGGATTAAAACGGAACGTCCGGCC GGACATGCCTCCGGGGCGAAGGTGCTGCAGGACCTGCGCTACGAGTACGACCCGGTGGGTAACGTGCTGAAAATCACCAA TGATGCTGAAGCAACCCGTTTCTGGAGCAATCAGAAAGTGGTGCCGGAGAACACGTACGTCTACGACAGCCTGTACCAGC TGGTCAGCGCAACCGGGCGCGAAATGGCAAATGCCGGACAGCAGGACAGCAATCTCCCCGCTGCCACCGTTCCCCTCACT ACCGACAGCTCTGTGTTTACAAACTATACCCGCACTTACAGCTACGATAGCGCCGGCAACCTGACTCAAATCCGTCACAG CGCGCCGGCGACAAACAACAGTTACACCACAAACATCACCGTCTCCGATAAAAGCAACCGGGGCGTGCTGAGTACGCTGA CTGAAAACGCTTCAGACGTTGACGCGCTGTTTACGGCGGGTGGTCAGCAGAAACAGCTGCAGCCTGGACAGAGTCTGGTC TGGACACCGCGTAACGAGCTGCTGAAGGTGACGCCGGTGGTGCGAGACGGCAGTACGGATGACCGGGAGAGCTACCGCTA CGACGGTGGCAGTCAGCGCATCCTGAAGCTCAGCGTACAGAAAACCGGTAACAGCGCACAGACGCAGCGGGCGCTGTACC TGCCGGGCCTGGAGCTGAGGAGCACAAAGTCCGGGGATAAGGAAACGGAAAGCCTGCAGGTTATCACTGTGGGTGAGGCG GGCCGGGCGCAGGTGCGCTTGCTGCACTGGGAGAGCGGCAGACCGGCAGAAATCACCGGCGACCTTATACGTTACAGCTA CGATAACCTGATAGGCAGCAGTCAGCTTGAGCTGGACGGCGATGGCAATATCATCAGCATGGAGGAGTATTATCCATACG GGGGCACCGCGGTATGGGCAGCCCGCAGCGCGGTGGAAGCGAACTACAAAACCGTGCGGTACTCTGGCAAGGAGCGTGAT GCGACGGGGTTGTATTACTACGGATATCGGTATTACCAGCCGTGGGCGGGTCGGTGGCTCTCCGCAGACCCGGCGGGCAC CATTGATGGATTGAACCTGTTCAGGATGGTGCGGAATAATCCAATTACATTGCGAGATGATGACGGGTTAGAACCGAAAA AGGCAGAGGATGGATATTATTACCATTTGACTAATGCCAGAAATTTAATGAGTATTGTAGAGAAGGGGTTTATTCCACAA GGCTCTCAGGGACCTACGCTCTCAGCGGGGGATCTAGAGAACAGGAAAAAAGGGGTTATTAGATATATTTATACTAAGGT GGCCACTGAACTTAACCGGGGGGAGATTAGCAAAAATAAAATTAGCAGCAATAATTTTAAGATGCCCTCTGATTTTTGGT CTGAGTTTAAGTTAGAAGGTTCCAGCATTACTAATGACAATGATATAGAAAGTGTAAATAAGAAACTAAATGATTCTATT GTGCGTGGCATTTCTGCTGTTCTTGATAAGGGCGAATTTAAAAAAAAGCATAATGAAAAAAAATCGGAAGATATTACAAG ATCAAGAATGAGAGTTATGGATGATGATGAAATAAATAAAATTATCACACAAAAACCACTCCTGGAACAGCAGCGAGAGG CCGCAAATACAAAGGGATATATTTACCTTGCCGCCACAAGGAATACACTTGAAAAATATGCAATTAATTACAAGTCATCC AATGATGACATGATATTACTGGCAATTCCTGATAGTATATTTTCTGCGAAGATCTTAGAAGAAGACGAACAGGAACCAGA CTGCGCAGTGAGGTACAGCGGGGGGGTATTATCAGCTGATCTGCGCTTTGTAAATCGGGAGGGACAAGTTGTACCTTTTG AGTATTCAGCTAGCGGTGAAATAATACTAGATTATCCATCCGTTATAAACTTCATCCGAAAGTAA
Upstream 100 bases:
>100_bases CATCCCACCCTGATAGCGCCCGTTCAGGCGAAATTATCCTGATTGCTGTATGATATTCTTTGCAGCCTTATCGGTTGCAT AACATATACAGGAGAATACC
Downstream 100 bases:
>100_bases AATTGAAATTTCGCCCTAATGGTCGTATTGAGTATCCCGTTTGAGTAGACCTAAAGAAGACAATCCGGTGAGACAGTTTT CCTGTCTCATTTGGGTTGTT
Product: YD repeat-containing protein
Products: NA
Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; Rhs Family Protein-Like Protein; Insecticidal xin; YD Repeat Protein; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticial xin; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Yd Repeat-Containing Protein; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 954; Mature: 953
Protein sequence:
>954_residues MSTSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRLHDAGLVNFTYLTGLAGNVLC SQGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAVTRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTA AEKALNLAGACVCHYDTAGLTQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGA VLTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVTTYEYEPETQRLSWIKTERPA GHASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKVVPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLT TDSSVFTNYTRTYSYDSAGNLTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLV WTPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELRSTKSGDKETESLQVITVGEA GRAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDGDGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERD ATGLYYYGYRYYQPWAGRWLSADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQ GSQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEGSSITNDNDIESVNKKLNDSI VRGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINKIITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSS NDDMILLAIPDSIFSAKILEEDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK
Sequences:
>Translated_954_residues MSTSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRLHDAGLVNFTYLTGLAGNVLC SQGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAVTRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTA AEKALNLAGACVCHYDTAGLTQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGA VLTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVTTYEYEPETQRLSWIKTERPA GHASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKVVPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLT TDSSVFTNYTRTYSYDSAGNLTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLV WTPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELRSTKSGDKETESLQVITVGEA GRAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDGDGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERD ATGLYYYGYRYYQPWAGRWLSADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQ GSQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEGSSITNDNDIESVNKKLNDSI VRGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINKIITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSS NDDMILLAIPDSIFSAKILEEDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK >Mature_953_residues STSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRLHDAGLVNFTYLTGLAGNVLCS QGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAVTRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTAA EKALNLAGACVCHYDTAGLTQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGAV LTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVTTYEYEPETQRLSWIKTERPAG HASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKVVPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLTT DSSVFTNYTRTYSYDSAGNLTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLVW TPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELRSTKSGDKETESLQVITVGEAG RAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDGDGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERDA TGLYYYGYRYYQPWAGRWLSADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQG SQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEGSSITNDNDIESVNKKLNDSIV RGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINKIITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSSN DDMILLAIPDSIFSAKILEEDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105269; Mature: 105138
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRL CCCCCCCCCCEEEEECCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCC HDAGLVNFTYLTGLAGNVLCSQGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAV CCCCEEEEHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHH TRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTAAEKALNLAGACVCHYDTAGL HHEECCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC TQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGA CCCCCEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCE VLTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVT EEEEECCCCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCEE TYEYEPETQRLSWIKTERPAGHASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKV EEECCCCHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCCCCCC VPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLTTDSSVFTNYTRTYSYDSAGN CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHCCCEEEECCCCCCC LTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLV HHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEE WTPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELR ECCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCCHHHCEEEECCCCEEE STKSGDKETESLQVITVGEAGRAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDG CCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECC DGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERDATGLYYYGYRYYQPWAGRWL CCCEEEEHHCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCEE SADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQ CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCC GSQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEECC SSITNDNDIESVNKKLNDSIVRGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINK CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH IITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSSNDDMILLAIPDSIFSAKILE HHHCCHHHHHHHHHCCCCCEEEEEECCCCHHHHEEEECCCCCCEEEEEECCHHHHHHHHH EDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK CCCCCCCEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCEEEECHHHHHHHCC >Mature Secondary Structure STSLFSKTPTVKVLDNRGLIVRDIAYHRHPGSPDVTSERITRHQYDARGFLTQSADPRL CCCCCCCCCEEEEECCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCC HDAGLVNFTYLTGLAGNVLCSQGVDNGITVVLNDAAGRPFIAVSNISTASDGTEDRSQAV CCCCEEEEHHHHCCCCCHHHHCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHH TRTWQYEDVELPGRLVSVTEQATGEAARVTERFMYAANTAAEKALNLAGACVCHYDTAGL HHEECCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC TQTDSVALTGVPLSVTRRLLKDAENPDVVTDWQGTDASAWNDMLAGETYTTLTTADATGA CCCCCEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCEEEEEEECCCCCE VLTTTDARGNTQRVAYDVSGLLSGSWLTMKGGTEQVIVASLTYSAAGQKLREVHGNGVVT EEEEECCCCCCEEEEEEHHHHCCCCEEEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCEE TYEYEPETQRLSWIKTERPAGHASGAKVLQDLRYEYDPVGNVLKITNDAEATRFWSNQKV EEECCCCHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCCCCCC VPENTYVYDSLYQLVSATGREMANAGQQDSNLPAATVPLTTDSSVFTNYTRTYSYDSAGN CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHCCCEEEECCCCCCC LTQIRHSAPATNNSYTTNITVSDKSNRGVLSTLTENASDVDALFTAGGQQKQLQPGQSLV HHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEE WTPRNELLKVTPVVRDGSTDDRESYRYDGGSQRILKLSVQKTGNSAQTQRALYLPGLELR ECCCCCCEEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCCHHHCEEEECCCCEEE STKSGDKETESLQVITVGEAGRAQVRLLHWESGRPAEITGDLIRYSYDNLIGSSQLELDG CCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECC DGNIISMEEYYPYGGTAVWAARSAVEANYKTVRYSGKERDATGLYYYGYRYYQPWAGRWL CCCEEEEHHCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCEE SADPAGTIDGLNLFRMVRNNPITLRDDDGLEPKKAEDGYYYHLTNARNLMSIVEKGFIPQ CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCC GSQGPTLSAGDLENRKKGVIRYIYTKVATELNRGEISKNKISSNNFKMPSDFWSEFKLEG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEECC SSITNDNDIESVNKKLNDSIVRGISAVLDKGEFKKKHNEKKSEDITRSRMRVMDDDEINK CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHH IITQKPLLEQQREAANTKGYIYLAATRNTLEKYAINYKSSNDDMILLAIPDSIFSAKILE HHHCCHHHHHHHHHCCCCCEEEEEECCCCHHHHEEEECCCCCCEEEEEECCHHHHHHHHH EDEQEPDCAVRYSGGVLSADLRFVNREGQVVPFEYSASGEIILDYPSVINFIRK CCCCCCCEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCEEEECHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA