Click here to switch to the map view.

The map label for this gene is ybfL [H]

Identifier: 160873719

GI number: 160873719

Start: 697820

End: 698929

Strand: Direct

Name: ybfL [H]

Synonym: Sbal195_0597

Alternate gene names: 160873719

Gene position: 697820-698929 (Clockwise)

Preceding gene: 160873718

Following gene: 160873721

Centisome position: 13.05

GC content: 44.41

Gene sequence:

>1110_bases
ATGTCACTTTTTGATCACCTATCTTTAGTCGAAGACACGCGCTCACACATTAATCAACGCCACAACCTTGTCGACGTACT
GTTCTTAATCTTATCGGCAGTAGCCAGTGGGCAAGATGGTTGGGCAGAAATTCAACAGTTCGGCGAGCTAAAACTTGAGT
GGCTACGTAAGTTTCGTCCATTTGCTAATGGCATTCCCCGTCGGCATACCATAGCACGTATCCTAAAAGCCGTAGGGCCG
GAGAATTTGCAGTTGTGCCTATTCAGTTGGATTAACGACATCCGCACCGCATCAGCTAAACCCATCATTGCTATCGATGG
TAAAACACTCAGAGGTGCCTCTAAGTTAGGGTGCAACACCTTACATTCCGTGGGTGCGTTCGACATTAATAATGGCTTGG
CGCTTTATCAAGAAATGGCCTCTGGAAAAGGCAAGGAAATTGAAACGGTACAATCACTTATTACCATGCTTAACATAAAT
AAAGCATTGATAACCATGGATGCTTTGCATGCCCAACGCGCGACGCTGGAAGCGATAGTCGCTCGTAAAGGAGATTATGT
GGTGCAGGTGAAAAGTAATCAACGGACTTTATTTCAAGCAGTTAAAGCGCAGTATGATGTGGCCTTCCAAGATGACAGTC
AGTTAGCCCAATTTGCCTGTTCGGAAAAAGGGCATGGAAGAACAGAGCAGCGGATTACATTTCAAATCCCATCGAAGCTG
AGTCCTAAATTGCAAGAAAAGTGGCCTTCAGTTAAGACATTAATAGCCGTTGAGCGACACAGAAAAATAGGCAATAAGAC
CAGCATAGAGACCAGTTTCTATCTCTCATCCCATGATATCGATCCCGAATATATTGCGACTGCTGTCCGAGGGCACTGGC
GAATTGAGAATAGTCTGCACTGGGTCCTGGATGTGGTTTATCGAGAAGATGCTTGTCGGGTTCACGAGCAAAGAACTGCC
GAATCACTGGCGATAGTGAGGCAAATGGCCCTGAATCTGGCAAAACTCGAAATAACACAAAAACGCAGTATGAAGAGTAA
GTTACATCGTTCTTTACTCAGTGATGAATATCGGGAATTGATGATTTTTGCAGATGTTAAATCAATTTAA

Upstream 100 bases:

>100_bases
CTAGGGTATAAATCAGGGCGAGATCGCACTTTGTTAAAAAAATTGAACTATTCCGCAATGCCATGATCTGAATGAGAAAT
TAATTACTTGGCCACTCTCC

Downstream 100 bases:

>100_bases
CAAAGTATGCTCCGGCCCTGCCTAGTGGCTAACTTGAGTAAAACACATAAATATCGAACATGTTGTACAACCTGAAGCCT
AGTTTGGTGTGAGGCAGCGT

Product: transposase IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGP
ENLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNIN
KALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKL
SPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLHWVLDVVYREDACRVHEQRTA
ESLAIVRQMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI

Sequences:

>Translated_369_residues
MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGP
ENLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNIN
KALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKL
SPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLHWVLDVVYREDACRVHEQRTA
ESLAIVRQMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI
>Mature_368_residues
SLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGPE
NLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINK
ALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKLS
PKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLHWVLDVVYREDACRVHEQRTAE
SLAIVRQMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=363, Percent_Identity=33.3333333333333, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1787733, Length=363, Percent_Identity=33.6088154269972, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1786924, Length=242, Percent_Identity=33.0578512396694, Blast_Score=148, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 41826; Mature: 41695

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FANGIPRRHTIARILKAVGPENLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNT
HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEECCHHHHCCHH
LHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIV
HHHCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKL
HCCCCEEEEECCCHHHHHHHHHHHHCEEECCHHHHHHHHHCCCCCCCCCCEEEEECCCCC
SPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLH
CCHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCEEECCCHH
WVLDVVYREDACRVHEQRTAESLAIVRQMALNLAKLEITQKRSMKSKLHRSLLSDEYREL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
MIFADVKSI
EHEECHHCC
>Mature Secondary Structure 
SLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FANGIPRRHTIARILKAVGPENLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNT
HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEECCHHHHCCHH
LHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIV
HHHCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKL
HCCCCEEEEECCCHHHHHHHHHHHHCEEECCHHHHHHHHHCCCCCCCCCCEEEEECCCCC
SPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLH
CCHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCEEECCCHH
WVLDVVYREDACRVHEQRTAESLAIVRQMALNLAKLEITQKRSMKSKLHRSLLSDEYREL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
MIFADVKSI
EHEECHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]