Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 160873709

GI number: 160873709

Start: 682533

End: 684686

Strand: Direct

Name: yrrC [H]

Synonym: Sbal195_0587

Alternate gene names: 160873709

Gene position: 682533-684686 (Clockwise)

Preceding gene: 160873708

Following gene: 160873710

Centisome position: 12.76

GC content: 40.85

Gene sequence:

>2154_bases
ATGAATGCTGCCTTAAATGAAGAGCTATTTCGCGTCACCAGTATCCCTTACAACTCATCAACGATGGTGATATTCATCGG
CACACCGTTAAGGAAAAACTCTTACAGAGCCAATAGCGGTAAATACTATGTCACGATAAAAGTAGATCCTGACACATTGC
CTGTAGAACCTGCAATTGGCCAGTATTGGTTAGTTAAAGGAGACCGTCATATCAAAAACATGGATATAGGGGATTACGTA
ATGCAACAGCATACTTACCAATCACCTGTCCATGTTGAATGCAGGTTGCCAGAAACTGGTGAGCAGCTAATTCAATTCAT
TGCGAGAGAAAACGACTTCAAGGGGATTGGTGAAAGTAAAGCCAGAGCACTCTGGGAGCTCCTAGGTAAAGATTTTCATG
CAACATTAAACAACGACACTCCTGAATCAAGAATATTGCTTAAAAGCGTTCTGAGCGAGGATTCCATAACCGCATTATTT
GAAGGGTATGCTAAATACAAAAATCTTGCCTACTGCAATTGGATGTCCGAACACAAGATACCTGCCAGTGTTCAGCAGCG
TTTGCTGAAATATCACAGTGAGCAATCCATTGAAGCAATTAAACAGAATCCTTATGTGTTAATTGGTTTTGGCATGAGTT
TTACAGAGGTGGATTCTATTTCTCAAGCGAAGCTTGAGGTCACAACAAATGATGACAGGCGATTAAGTGCGGCGCTTGAA
ATTGCGATACGTAAAGAGATAGAGAAAGGGCATACTTATACGATACAAGCTAATTTACGCCCTCATTTAACCAAGCTACT
AAAAGATAAAGATTTGGTCGCCAAAGCGTTTCATGCAGGACACGATAAAGCTCAGTATTTATTAAATCACACAACAGGAA
CTTACCATCCCACAGCTCAGTTATTGATGGAAAATGTTGTGACTAAACGACTCAAAGCACTTGCTAGTCAAAACAACTTA
TATGACGAACATGCAAATTCAGCATATTGCTCTGCTGTTGGGGAGCTACCTTATGAGTTAACAAAGAAGCAAGAAGAAGC
GGTCACGACATGCCTAGATAACGCAGTAAGCTGTATCACCGGTGGTGCTGGCACAGGTAAAACGACAGTGCTAAGAACTG
CGTTGCGTGCCTATTATGCAATGGGGTTTGAAATACATGCAGTAGCCTTAAGTGGTCGTGCGGCAATGCGCTTACATGAG
TCGATTGGTTTTATCACTTCAACAATTGCAAAGTTACTGCGAAATAAACCTATTGATTCAGAAAAACAAAAACATCTGCT
CGTCATTGACGAAGCCAGCATGATTGATTTGCCGACCATGTACCGTTTAGTAAATCACATTCACCCCTCAGTGAGAATTA
TCTTAACTGGCGACCCAAATCAGCTTCCACCAATTGGCTGCGGTAAAGTACTAGCGGATATTGTTGAATCTAAAGTGATT
GCAAATACTTTACTGGACATTGTGAAGCGTCAGGAAGGCTATACGGGTATTCCTGAGTATTCGAAATTAATAAATCAAGG
GGAAGTACCAGAGCAACTTACCACTGGCGCAATTTATTTTCACGAAACAGATAAAAAAGAGATATCTCAAGTTTGTTGTA
ATTTGTATCAACAATCTCCTGAGAACAGCCGCGTGATGGCTTCAACCAAAGCACTGGTTGCTGAAATCAATAAGCTAACT
CAAGAGGCTGTAAATCATAGTGGCAGCAGACTCGAATTTGAAATGAATGGTGAGCTGTTCTTTCAACATCTACGACTTAA
TGATTCAATCTTGTTTACGCAAAATCACTATGATAAAGGTATTCAGAACGGTTCGCTTGGTGCCCTAACAAGCGTCGTGG
CCTCTGGGGATAGTTATGGTGAAGTGACACTCGATACTGGAGATAAGCTTATAGTGACTCAAGCCGTACTTGATTGCATG
GAATTGGGTTATGCAATAACTCTTCATAAGGCTCAAGGTTCTCAGTTCCCACGTATTATCATTGCTTTGCAGAAAGGTAA
AATTGTTGACCGAGCATGGCTCTATACCGCTATCACCAGAGCTGAAAGTGAAATTCATATTGTGGGGGCTGAAGCTGACT
TAAAAACCATTACTGCAGCTCCTAGTCATTCAAATAAGCGTAATAGTTATCTTGTTGATCTTTTAAAAAGATAA

Upstream 100 bases:

>100_bases
AAAATATTGAATTAAAAGCAAAAGTGAATGAGCTTGAAGGTAAACTTAAGCGTTTCGGTGAATTGTCAGAAACCTTGTCT
GAAATGGGGTTCATGCCGCG

Downstream 100 bases:

>100_bases
AAATAAAATTTGTTACATTGGCGAGTGACTACAGGTACAAGCGGAGATAAGTTGTGTTCAAACGCGGAGCGTTATCTGCA
TTTAATTCTGCGATCTTACG

Product: AAA ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MNAALNEELFRVTSIPYNSSTMVIFIGTPLRKNSYRANSGKYYVTIKVDPDTLPVEPAIGQYWLVKGDRHIKNMDIGDYV
MQQHTYQSPVHVECRLPETGEQLIQFIARENDFKGIGESKARALWELLGKDFHATLNNDTPESRILLKSVLSEDSITALF
EGYAKYKNLAYCNWMSEHKIPASVQQRLLKYHSEQSIEAIKQNPYVLIGFGMSFTEVDSISQAKLEVTTNDDRRLSAALE
IAIRKEIEKGHTYTIQANLRPHLTKLLKDKDLVAKAFHAGHDKAQYLLNHTTGTYHPTAQLLMENVVTKRLKALASQNNL
YDEHANSAYCSAVGELPYELTKKQEEAVTTCLDNAVSCITGGAGTGKTTVLRTALRAYYAMGFEIHAVALSGRAAMRLHE
SIGFITSTIAKLLRNKPIDSEKQKHLLVIDEASMIDLPTMYRLVNHIHPSVRIILTGDPNQLPPIGCGKVLADIVESKVI
ANTLLDIVKRQEGYTGIPEYSKLINQGEVPEQLTTGAIYFHETDKKEISQVCCNLYQQSPENSRVMASTKALVAEINKLT
QEAVNHSGSRLEFEMNGELFFQHLRLNDSILFTQNHYDKGIQNGSLGALTSVVASGDSYGEVTLDTGDKLIVTQAVLDCM
ELGYAITLHKAQGSQFPRIIIALQKGKIVDRAWLYTAITRAESEIHIVGAEADLKTITAAPSHSNKRNSYLVDLLKR

Sequences:

>Translated_717_residues
MNAALNEELFRVTSIPYNSSTMVIFIGTPLRKNSYRANSGKYYVTIKVDPDTLPVEPAIGQYWLVKGDRHIKNMDIGDYV
MQQHTYQSPVHVECRLPETGEQLIQFIARENDFKGIGESKARALWELLGKDFHATLNNDTPESRILLKSVLSEDSITALF
EGYAKYKNLAYCNWMSEHKIPASVQQRLLKYHSEQSIEAIKQNPYVLIGFGMSFTEVDSISQAKLEVTTNDDRRLSAALE
IAIRKEIEKGHTYTIQANLRPHLTKLLKDKDLVAKAFHAGHDKAQYLLNHTTGTYHPTAQLLMENVVTKRLKALASQNNL
YDEHANSAYCSAVGELPYELTKKQEEAVTTCLDNAVSCITGGAGTGKTTVLRTALRAYYAMGFEIHAVALSGRAAMRLHE
SIGFITSTIAKLLRNKPIDSEKQKHLLVIDEASMIDLPTMYRLVNHIHPSVRIILTGDPNQLPPIGCGKVLADIVESKVI
ANTLLDIVKRQEGYTGIPEYSKLINQGEVPEQLTTGAIYFHETDKKEISQVCCNLYQQSPENSRVMASTKALVAEINKLT
QEAVNHSGSRLEFEMNGELFFQHLRLNDSILFTQNHYDKGIQNGSLGALTSVVASGDSYGEVTLDTGDKLIVTQAVLDCM
ELGYAITLHKAQGSQFPRIIIALQKGKIVDRAWLYTAITRAESEIHIVGAEADLKTITAAPSHSNKRNSYLVDLLKR
>Mature_717_residues
MNAALNEELFRVTSIPYNSSTMVIFIGTPLRKNSYRANSGKYYVTIKVDPDTLPVEPAIGQYWLVKGDRHIKNMDIGDYV
MQQHTYQSPVHVECRLPETGEQLIQFIARENDFKGIGESKARALWELLGKDFHATLNNDTPESRILLKSVLSEDSITALF
EGYAKYKNLAYCNWMSEHKIPASVQQRLLKYHSEQSIEAIKQNPYVLIGFGMSFTEVDSISQAKLEVTTNDDRRLSAALE
IAIRKEIEKGHTYTIQANLRPHLTKLLKDKDLVAKAFHAGHDKAQYLLNHTTGTYHPTAQLLMENVVTKRLKALASQNNL
YDEHANSAYCSAVGELPYELTKKQEEAVTTCLDNAVSCITGGAGTGKTTVLRTALRAYYAMGFEIHAVALSGRAAMRLHE
SIGFITSTIAKLLRNKPIDSEKQKHLLVIDEASMIDLPTMYRLVNHIHPSVRIILTGDPNQLPPIGCGKVLADIVESKVI
ANTLLDIVKRQEGYTGIPEYSKLINQGEVPEQLTTGAIYFHETDKKEISQVCCNLYQQSPENSRVMASTKALVAEINKLT
QEAVNHSGSRLEFEMNGELFFQHLRLNDSILFTQNHYDKGIQNGSLGALTSVVASGDSYGEVTLDTGDKLIVTQAVLDCM
ELGYAITLHKAQGSQFPRIIIALQKGKIVDRAWLYTAITRAESEIHIVGAEADLKTITAAPSHSNKRNSYLVDLLKR

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=116, Percent_Identity=36.2068965517241, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 79941; Mature: 79941

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAALNEELFRVTSIPYNSSTMVIFIGTPLRKNSYRANSGKYYVTIKVDPDTLPVEPAIG
CCCCCCHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
QYWLVKGDRHIKNMDIGDYVMQQHTYQSPVHVECRLPETGEQLIQFIARENDFKGIGESK
CEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHH
ARALWELLGKDFHATLNNDTPESRILLKSVLSEDSITALFEGYAKYKNLAYCNWMSEHKI
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCC
PASVQQRLLKYHSEQSIEAIKQNPYVLIGFGMSFTEVDSISQAKLEVTTNDDRRLSAALE
CHHHHHHHHHHHCHHHHHHHHCCCEEEEECCCCHHHHCCCCCEEEEEECCCCHHHHHHHH
IAIRKEIEKGHTYTIQANLRPHLTKLLKDKDLVAKAFHAGHDKAQYLLNHTTGTYHPTAQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHH
LLMENVVTKRLKALASQNNLYDEHANSAYCSAVGELPYELTKKQEEAVTTCLDNAVSCIT
HHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GGAGTGKTTVLRTALRAYYAMGFEIHAVALSGRAAMRLHESIGFITSTIAKLLRNKPIDS
CCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EKQKHLLVIDEASMIDLPTMYRLVNHIHPSVRIILTGDPNQLPPIGCGKVLADIVESKVI
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ANTLLDIVKRQEGYTGIPEYSKLINQGEVPEQLTTGAIYFHETDKKEISQVCCNLYQQSP
HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHCCC
ENSRVMASTKALVAEINKLTQEAVNHSGSRLEFEMNGELFFQHLRLNDSILFTQNHYDKG
CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEECCCHHCC
IQNGSLGALTSVVASGDSYGEVTLDTGDKLIVTQAVLDCMELGYAITLHKAQGSQFPRII
CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEHHHHHHHHHHCCEEEEEEECCCCCCCEEE
IALQKGKIVDRAWLYTAITRAESEIHIVGAEADLKTITAAPSHSNKRNSYLVDLLKR
EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNAALNEELFRVTSIPYNSSTMVIFIGTPLRKNSYRANSGKYYVTIKVDPDTLPVEPAIG
CCCCCCHHHHHEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
QYWLVKGDRHIKNMDIGDYVMQQHTYQSPVHVECRLPETGEQLIQFIARENDFKGIGESK
CEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHH
ARALWELLGKDFHATLNNDTPESRILLKSVLSEDSITALFEGYAKYKNLAYCNWMSEHKI
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCC
PASVQQRLLKYHSEQSIEAIKQNPYVLIGFGMSFTEVDSISQAKLEVTTNDDRRLSAALE
CHHHHHHHHHHHCHHHHHHHHCCCEEEEECCCCHHHHCCCCCEEEEEECCCCHHHHHHHH
IAIRKEIEKGHTYTIQANLRPHLTKLLKDKDLVAKAFHAGHDKAQYLLNHTTGTYHPTAQ
HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHH
LLMENVVTKRLKALASQNNLYDEHANSAYCSAVGELPYELTKKQEEAVTTCLDNAVSCIT
HHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GGAGTGKTTVLRTALRAYYAMGFEIHAVALSGRAAMRLHESIGFITSTIAKLLRNKPIDS
CCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EKQKHLLVIDEASMIDLPTMYRLVNHIHPSVRIILTGDPNQLPPIGCGKVLADIVESKVI
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ANTLLDIVKRQEGYTGIPEYSKLINQGEVPEQLTTGAIYFHETDKKEISQVCCNLYQQSP
HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHCCC
ENSRVMASTKALVAEINKLTQEAVNHSGSRLEFEMNGELFFQHLRLNDSILFTQNHYDKG
CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCEEEECCCHHCC
IQNGSLGALTSVVASGDSYGEVTLDTGDKLIVTQAVLDCMELGYAITLHKAQGSQFPRII
CCCCCHHHHHHHHHCCCCCCEEEECCCCEEEHHHHHHHHHHCCEEEEEEECCCCCCCEEE
IALQKGKIVDRAWLYTAITRAESEIHIVGAEADLKTITAAPSHSNKRNSYLVDLLKR
EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]