| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yhhJ [C]
Identifier: 160873650
GI number: 160873650
Start: 607620
End: 608837
Strand: Direct
Name: yhhJ [C]
Synonym: Sbal195_0528
Alternate gene names: 160873650
Gene position: 607620-608837 (Clockwise)
Preceding gene: 160873649
Following gene: 160873651
Centisome position: 11.36
GC content: 49.84
Gene sequence:
>1218_bases ATGGCCTTGCTCATCGCGTTAATTCGCCGTGAGCTCAGTGCCCTGTGGCGCGATCCTTGGCAGTTGGCGCTGATCAGTTA TATTCCGCTGATCGGGATTTTCTGCCTGTGGTGGCTGTTCAGTGCAGGCTTACCGAGGCAACTGCCGGTGGCGATTGTCG ATCAAGACCACAGTCAATTAAGCCGTATGCTGACCCGTCAGCTGAAGGCTAATCCTGTGACTGATCCACAAAACTTCACC GATTTAGCCGCGGCGGTGTCGGCGATGCAGCAGGCGAAAGTCTACGCTATCGTGGTCTTTCCCTATGATATGAAAAAAGA TTTGCTCACTGGCCACAAGCCCACCATAGATGTGCGCTACAACAGCCAATTTTTGCTGGTGGGTAAGTTACTCTCAAGCC AAATTCAGCTGAGTCTGGGTGACGGCTTGTTGCAAGTAGCGGGCTTAAAACAGCTCGCCAACGGTACACCTAAATCCCAA GTGGCAGTCAATTTAAGCCCAATCAAAAGCCAAACAACGGCTTTGTTTAACCGAAATAACAACTATATAGGCTTCTTAGT GCCGCCAGTGCTCGTTGCGCTTTGGCAATTATTATCTATGTTGGTCATGGCCAACAGCTTAAATCGAGAGCTGCATTTAG CGCCCACGACTCAGGTCAATGGCATATCGAATACCTTAACCGAGCATTTTTGGCCTAAGGTGCTGGCGAAATTGGTGTTG TTTACGCCGATATTGATGCTGCAGGGCTGCTTTATTTTAACTTGGCTGTACTTGTATCTCGCGTTGCCGATGGCGGGCAG TTTAGCCCTATTGCTGTTAGCACAATTAGTGATGTTGCTGGCGGTCTGGAGTCTGGTGTTATTAATCTTTGTGGTAATGC GTGACAGTGCGCGGGTTATCAGTTTTTGCACCGCCTTATTTGCGCCCGCTTTTGCCTTTATGGGGATCACTTTCCCTACC CATGATATGCCGCAATTGGCGCAGTGGTGGCGACAGATAATGCCGTCGAGCCACTATATTGAGTCCCACGTGAGTGTCGT CAGTTATGGCGCCGCTTGGCCGAATGTGGCGATCCAGCTCAGCAGTTATTGGGGCTTTATCTGTTTGCTGCCTTTGATAT ATTTGTTATCGCGTAAATTACTGCCGATCACGATCACCGCCAATACTATCGTGACCGCATATGACTCGGACGCAGCCTTA CCTGCGAAGGAGCAATAG
Upstream 100 bases:
>100_bases TGCTGCTGCGCAGTGAGTAAAAGCCGTGACTGAACGCACGCCCAACGCCAATACGGTCGATAAGACTAAGAGTGACTCAC AGCCATCAAGCAGAAGCTTT
Downstream 100 bases:
>100_bases GATGAATATGTGGCGACTGATATTAACTGAACTTAAGGCCATTATTAGCGATAAAGCGATCGCAGTGACCTTGTTTGGTG GTGTGCTGTTTTATTCGATT
Product: ABC-2 type transporter
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MALLIALIRRELSALWRDPWQLALISYIPLIGIFCLWWLFSAGLPRQLPVAIVDQDHSQLSRMLTRQLKANPVTDPQNFT DLAAAVSAMQQAKVYAIVVFPYDMKKDLLTGHKPTIDVRYNSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLANGTPKSQ VAVNLSPIKSQTTALFNRNNNYIGFLVPPVLVALWQLLSMLVMANSLNRELHLAPTTQVNGISNTLTEHFWPKVLAKLVL FTPILMLQGCFILTWLYLYLALPMAGSLALLLLAQLVMLLAVWSLVLLIFVVMRDSARVISFCTALFAPAFAFMGITFPT HDMPQLAQWWRQIMPSSHYIESHVSVVSYGAAWPNVAIQLSSYWGFICLLPLIYLLSRKLLPITITANTIVTAYDSDAAL PAKEQ
Sequences:
>Translated_405_residues MALLIALIRRELSALWRDPWQLALISYIPLIGIFCLWWLFSAGLPRQLPVAIVDQDHSQLSRMLTRQLKANPVTDPQNFT DLAAAVSAMQQAKVYAIVVFPYDMKKDLLTGHKPTIDVRYNSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLANGTPKSQ VAVNLSPIKSQTTALFNRNNNYIGFLVPPVLVALWQLLSMLVMANSLNRELHLAPTTQVNGISNTLTEHFWPKVLAKLVL FTPILMLQGCFILTWLYLYLALPMAGSLALLLLAQLVMLLAVWSLVLLIFVVMRDSARVISFCTALFAPAFAFMGITFPT HDMPQLAQWWRQIMPSSHYIESHVSVVSYGAAWPNVAIQLSSYWGFICLLPLIYLLSRKLLPITITANTIVTAYDSDAAL PAKEQ >Mature_404_residues ALLIALIRRELSALWRDPWQLALISYIPLIGIFCLWWLFSAGLPRQLPVAIVDQDHSQLSRMLTRQLKANPVTDPQNFTD LAAAVSAMQQAKVYAIVVFPYDMKKDLLTGHKPTIDVRYNSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLANGTPKSQV AVNLSPIKSQTTALFNRNNNYIGFLVPPVLVALWQLLSMLVMANSLNRELHLAPTTQVNGISNTLTEHFWPKVLAKLVLF TPILMLQGCFILTWLYLYLALPMAGSLALLLLAQLVMLLAVWSLVLLIFVVMRDSARVISFCTALFAPAFAFMGITFPTH DMPQLAQWWRQIMPSSHYIESHVSVVSYGAAWPNVAIQLSSYWGFICLLPLIYLLSRKLLPITITANTIVTAYDSDAALP AKEQ
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45158; Mature: 45027
Theoretical pI: Translated: 9.56; Mature: 9.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLIALIRRELSALWRDPWQLALISYIPLIGIFCLWWLFSAGLPRQLPVAIVDQDHSQL CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHH SRMLTRQLKANPVTDPQNFTDLAAAVSAMQQAKVYAIVVFPYDMKKDLLTGHKPTIDVRY HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCCCCEEEEEE NSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLANGTPKSQVAVNLSPIKSQTTALFNRNN CCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHEECCC NYIGFLVPPVLVALWQLLSMLVMANSLNRELHLAPTTQVNGISNTLTEHFWPKVLAKLVL CEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH FTPILMLQGCFILTWLYLYLALPMAGSLALLLLAQLVMLLAVWSLVLLIFVVMRDSARVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SFCTALFAPAFAFMGITFPTHDMPQLAQWWRQIMPSSHYIESHVSVVSYGAAWPNVAIQL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEE SSYWGFICLLPLIYLLSRKLLPITITANTIVTAYDSDAALPAKEQ HHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCC >Mature Secondary Structure ALLIALIRRELSALWRDPWQLALISYIPLIGIFCLWWLFSAGLPRQLPVAIVDQDHSQL HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHH SRMLTRQLKANPVTDPQNFTDLAAAVSAMQQAKVYAIVVFPYDMKKDLLTGHKPTIDVRY HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHCCCCCEEEEEE NSQFLLVGKLLSSQIQLSLGDGLLQVAGLKQLANGTPKSQVAVNLSPIKSQTTALFNRNN CCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHEECCC NYIGFLVPPVLVALWQLLSMLVMANSLNRELHLAPTTQVNGISNTLTEHFWPKVLAKLVL CEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH FTPILMLQGCFILTWLYLYLALPMAGSLALLLLAQLVMLLAVWSLVLLIFVVMRDSARVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH SFCTALFAPAFAFMGITFPTHDMPQLAQWWRQIMPSSHYIESHVSVVSYGAAWPNVAIQL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEE SSYWGFICLLPLIYLLSRKLLPITITANTIVTAYDSDAALPAKEQ HHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA