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The map label for this gene is cph2 [H]

Identifier: 160873548

GI number: 160873548

Start: 489410

End: 491275

Strand: Reverse

Name: cph2 [H]

Synonym: Sbal195_0423

Alternate gene names: 160873548

Gene position: 491275-489410 (Counterclockwise)

Preceding gene: 160873549

Following gene: 160873547

Centisome position: 9.19

GC content: 45.55

Gene sequence:

>1866_bases
ATGCTTAAACGAAACTCGTCACTCATACTCTTGCTGTGGCTATGGATGTGTTCAACACCTTCATTCGCAACCCTATTAAG
CATTGATGAATCAACGGCGACCCCGTTAAACCTTACGCCTTGGTTGATGGTGAGCCACCCCACTTCGGCGAAGGAATTTA
CCGAGATCCAAGCCTTGCCAAAAACGGATTGGCATAACTTCACCAATAAAGACATTCAAAAACTCAGCGGCCATGATTTT
TGGCTGAGTTTCAGCTTAACCAGCCCAGACGATGCACTTTCACGTATTTTAGCGTTAGATAACCCCTTGTTAGACAAGGT
GACTATCTATCATTTAGTCAATAATAAGCTCGCTAAAACTGTGCTTATGGGCGACACCTTTCCCTATAACGAACGGCCAT
TTTTGAGCAATATCTTCCTGTATCCTTTTAAACTCAACATGGATGATACCCATACTTTTTATTTGCATATTCAGACCGAA
GGCAGCGCTGCGGTATCGTTGAATCTCTGGTCATCTAACGACTTAGCCCAGATTGCTGAATCAACCGCCGTCGAACATGG
TTTCCAACTCGGCGTACTGGCCGCGATTGGTATCTTTAGCCTCTTTATTGCGATTGCATCGGGCTCATTCAGTTACAGCT
ATTATTCCGGCTACGTCCTGAGCATGACCTTGCTCGTCGCTACCATCAACGGTTTTGCCTTTCGATTCCTCTGGCCAAAT
TGGCCAATATTACAGCAAGTTATGGTGCCGTTTTTACTACCAATCGTTATGGCATTTGCGCTGATGTTTACCGAAAAAAT
ATTACAGCTCAAATATTTAAACCGCCGCATGCTGCTGACTTGTCGCTATAGCGCTGTGTATATCCTATGTATTGGACTCG
CCACGCCTTTTATCCAATATGGAACTGCGCTCTATATCGAGATCATTTCCGTTGCAGTGCTCAGCCTGGTACTGATGGTC
TTTGCTATTACTCAGGCCATCAATGGCCATAAACTGGCACGTATGTACACTATTGGCTGGGTGAGTATGCTGACAGGAGC
TTGCATCAGTAGCTTGTTGTATCTCAGCGTGATTGACCTCAATTTAAAACCGCAAACGCCTGTCATGCTCGGCCTGACAT
TTGAAATCATCTTTATGTCTTTGGTGCTAGCCATCCGCTATAACGATGAACGCAAAGCTAAGCTACGTATTCAGCAAGAG
GCCTTGAAGCAAGCACAGAAAATTCGCAGCGCGCGGGAAGAAGCCCTAAAAGCGGAAGCCGAGAGCAATGAGAAACTCGA
GCAAATGGTGCAAGAGCGCACCTTAGAACTTGAAATCACCCTCAGAGAATTACATGAGGTAAACCAAAAGCTAACCGAAC
AAAGCACTATCGACAGTTTAACTGGGGTTAAAAACCGCAGTGCTTTCGATAAACGTTTGATCGCTGAAAGCCGGATCAGC
CGCAGGCAAGAAACACCCATAGCCCTGTTGATGCTCGATATCGATCGCTTCAAGCTGATCAACGATAGATTTGGCCATCT
TGCAGGCGATGAAGCCTTACGAACCATAGCCCAAACATTACAGCAACATTTAAAGCGGCCAACGGATCTCGTATCACGTT
ATGGAGGCGAGGAGTTTGCTATCATCCTGCCTAATACAGCAGAAGATGGTGCACTCCAAGTCGCTGAAACGATAAGAGAC
GCAGTTGCCTCTCTCCATTTCGAATGGGAAGGTGTAGCGATACCTTTGACTATCAGTATCGGAGTCAGTGCCGATATCGT
CACTAACGATCAGCACAGCACCAAATTATTAGAACAAGCGGATAAAGCCCTCTACCAAGCGAAAAATGGTGGACGTAATC
AAGTCAGCTTATTTTCATCAGTTTAA

Upstream 100 bases:

>100_bases
ATCGCGAGTTATATTGCAAACTTGCGCGGTGAAAATGCTGATGAGTTTGCAGCGCGTTGCTACCAGAATAGCGTAGCTTT
TTTTAATTTGGACCGAGTCC

Downstream 100 bases:

>100_bases
GCAGGACCAGTACCTAATTAGGAGTCAAATGTGAATATCATTACCAGTGCCTTCCCTCAGCGTAGAATGCGCCGCATGCG
TAAACATGATTTTAGCCGTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MLKRNSSLILLLWLWMCSTPSFATLLSIDESTATPLNLTPWLMVSHPTSAKEFTEIQALPKTDWHNFTNKDIQKLSGHDF
WLSFSLTSPDDALSRILALDNPLLDKVTIYHLVNNKLAKTVLMGDTFPYNERPFLSNIFLYPFKLNMDDTHTFYLHIQTE
GSAAVSLNLWSSNDLAQIAESTAVEHGFQLGVLAAIGIFSLFIAIASGSFSYSYYSGYVLSMTLLVATINGFAFRFLWPN
WPILQQVMVPFLLPIVMAFALMFTEKILQLKYLNRRMLLTCRYSAVYILCIGLATPFIQYGTALYIEIISVAVLSLVLMV
FAITQAINGHKLARMYTIGWVSMLTGACISSLLYLSVIDLNLKPQTPVMLGLTFEIIFMSLVLAIRYNDERKAKLRIQQE
ALKQAQKIRSAREEALKAEAESNEKLEQMVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRIS
RRQETPIALLMLDIDRFKLINDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD
AVASLHFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFSSV

Sequences:

>Translated_621_residues
MLKRNSSLILLLWLWMCSTPSFATLLSIDESTATPLNLTPWLMVSHPTSAKEFTEIQALPKTDWHNFTNKDIQKLSGHDF
WLSFSLTSPDDALSRILALDNPLLDKVTIYHLVNNKLAKTVLMGDTFPYNERPFLSNIFLYPFKLNMDDTHTFYLHIQTE
GSAAVSLNLWSSNDLAQIAESTAVEHGFQLGVLAAIGIFSLFIAIASGSFSYSYYSGYVLSMTLLVATINGFAFRFLWPN
WPILQQVMVPFLLPIVMAFALMFTEKILQLKYLNRRMLLTCRYSAVYILCIGLATPFIQYGTALYIEIISVAVLSLVLMV
FAITQAINGHKLARMYTIGWVSMLTGACISSLLYLSVIDLNLKPQTPVMLGLTFEIIFMSLVLAIRYNDERKAKLRIQQE
ALKQAQKIRSAREEALKAEAESNEKLEQMVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRIS
RRQETPIALLMLDIDRFKLINDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD
AVASLHFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFSSV
>Mature_621_residues
MLKRNSSLILLLWLWMCSTPSFATLLSIDESTATPLNLTPWLMVSHPTSAKEFTEIQALPKTDWHNFTNKDIQKLSGHDF
WLSFSLTSPDDALSRILALDNPLLDKVTIYHLVNNKLAKTVLMGDTFPYNERPFLSNIFLYPFKLNMDDTHTFYLHIQTE
GSAAVSLNLWSSNDLAQIAESTAVEHGFQLGVLAAIGIFSLFIAIASGSFSYSYYSGYVLSMTLLVATINGFAFRFLWPN
WPILQQVMVPFLLPIVMAFALMFTEKILQLKYLNRRMLLTCRYSAVYILCIGLATPFIQYGTALYIEIISVAVLSLVLMV
FAITQAINGHKLARMYTIGWVSMLTGACISSLLYLSVIDLNLKPQTPVMLGLTFEIIFMSLVLAIRYNDERKAKLRIQQE
ALKQAQKIRSAREEALKAEAESNEKLEQMVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRIS
RRQETPIALLMLDIDRFKLINDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFAIILPNTAEDGALQVAETIRD
AVASLHFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQADKALYQAKNGGRNQVSLFSSV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=36.6279069767442, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=37.5, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=41.0112359550562, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=36.5168539325843, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=38.5869565217391, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.879781420765, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=36.8098159509202, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=34.5454545454545, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=32.7044025157233, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=34.1614906832298, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=28.8135593220339, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=32.4742268041237, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=177, Percent_Identity=33.8983050847458, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=112, Percent_Identity=33.0357142857143, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 69921; Mature: 69921

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50007 PIPLC_X_DOMAIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRNSSLILLLWLWMCSTPSFATLLSIDESTATPLNLTPWLMVSHPTSAKEFTEIQALP
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCC
KTDWHNFTNKDIQKLSGHDFWLSFSLTSPDDALSRILALDNPLLDKVTIYHLVNNKLAKT
CCCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLMGDTFPYNERPFLSNIFLYPFKLNMDDTHTFYLHIQTEGSAAVSLNLWSSNDLAQIAE
HEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHH
STAVEHGFQLGVLAAIGIFSLFIAIASGSFSYSYYSGYVLSMTLLVATINGFAFRFLWPN
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEECCC
WPILQQVMVPFLLPIVMAFALMFTEKILQLKYLNRRMLLTCRYSAVYILCIGLATPFIQY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHH
GTALYIEIISVAVLSLVLMVFAITQAINGHKLARMYTIGWVSMLTGACISSLLYLSVIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
NLKPQTPVMLGLTFEIIFMSLVLAIRYNDERKAKLRIQQEALKQAQKIRSAREEALKAEA
CCCCCCCEEEHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ESNEKLEQMVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRIS
CCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRQETPIALLMLDIDRFKLINDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFA
HCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEE
IILPNTAEDGALQVAETIRDAVASLHFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQA
EEECCCCCCHHHHHHHHHHHHHHHHEEEECCEEEEEEEEECCEEEEEECCCHHHHHHHHH
DKALYQAKNGGRNQVSLFSSV
HHHHHHHCCCCCCEEEHCCCC
>Mature Secondary Structure
MLKRNSSLILLLWLWMCSTPSFATLLSIDESTATPLNLTPWLMVSHPTSAKEFTEIQALP
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCC
KTDWHNFTNKDIQKLSGHDFWLSFSLTSPDDALSRILALDNPLLDKVTIYHLVNNKLAKT
CCCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLMGDTFPYNERPFLSNIFLYPFKLNMDDTHTFYLHIQTEGSAAVSLNLWSSNDLAQIAE
HEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHH
STAVEHGFQLGVLAAIGIFSLFIAIASGSFSYSYYSGYVLSMTLLVATINGFAFRFLWPN
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEECCC
WPILQQVMVPFLLPIVMAFALMFTEKILQLKYLNRRMLLTCRYSAVYILCIGLATPFIQY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHH
GTALYIEIISVAVLSLVLMVFAITQAINGHKLARMYTIGWVSMLTGACISSLLYLSVIDL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
NLKPQTPVMLGLTFEIIFMSLVLAIRYNDERKAKLRIQQEALKQAQKIRSAREEALKAEA
CCCCCCCEEEHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
ESNEKLEQMVQERTLELEITLRELHEVNQKLTEQSTIDSLTGVKNRSAFDKRLIAESRIS
CCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRQETPIALLMLDIDRFKLINDRFGHLAGDEALRTIAQTLQQHLKRPTDLVSRYGGEEFA
HCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEE
IILPNTAEDGALQVAETIRDAVASLHFEWEGVAIPLTISIGVSADIVTNDQHSTKLLEQA
EEECCCCCCHHHHHHHHHHHHHHHHEEEECCEEEEEEEEECCEEEEEECCCHHHHHHHHH
DKALYQAKNGGRNQVSLFSSV
HHHHHHHCCCCCCEEEHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]