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The map label for this gene is cph2 [H]

Identifier: 160873438

GI number: 160873438

Start: 357879

End: 358901

Strand: Reverse

Name: cph2 [H]

Synonym: Sbal195_0313

Alternate gene names: 160873438

Gene position: 358901-357879 (Counterclockwise)

Preceding gene: 160873439

Following gene: 160873436

Centisome position: 6.71

GC content: 49.07

Gene sequence:

>1023_bases
ATGCGACCCAACCGACAGCAACTGATCCGTTCGTTATTTGACGAATATATTGAGATGTATTCCTCCCGTGATGACAGGCT
AACCCACCGCTTTAGTGAGAACTTTAGCGGCTATGCTGGCAGTAGTGACCAGCTTGTCACCGATAGGGAAGAATGGGTGC
GGATCACTCGGCAGGACTTTGCACAAGTGCCTGAGCGGATCCATATCGAAATGTTAGCTCTCTCCTTACAAGATCTTGCC
GACAACCTCGTGGTTGTGACTGCCTTTTTCCATATCCACTTACCCATCCCTAATCCTATGCTTTCCCGCGAGACAGCACG
GCTAGTATTGATATTTCGTTTAGAACACAAAGACTGGATGATTGCCCACAGTGGCATATCCATCCCCTACGGCTTAGCCC
ACAAAGGGGAGATTTACCCGATAGCACGATTAGAGGAACGTAATGTCGAACTTGAATCCATGATCAAGGCACGAACCTGT
GAGCTGGCAGAAGCCAATAGGCAACTCGAAATACTCAGCAATACCGATGGTTTAACCAATATCGGCAACCGCCGCCTATT
TGACATGATGTTACAAACGGAGTGGAGCCGAGGACAAAGGAGCAACTCATCACTGGCTCTCATCATGCTCGATATTGACC
ACTTCAAACAATTTAACGATCACTATGGCCACCTCGCCGGCGATGATTGTCTTAAACAACTGGCCAGTACTTTGTCCCAA
TCCGGCCGCAGAGCGGGCGAACTCGTGGCTCGCTACGGTGGTGAGGAATTTGTCATTCTGTTGCCCAATATCGACAAACA
AACGGTACTCGACACAGCGCAGCATATTCATCAGTTAATCCAAGCCATTGCCATTCCACATGCGGATACCGACCTTGGTA
TTGTGACCGTCAGTGCAGGAGTCGCTTATTTGCAACCCTCAAACCAACAAAGCCATTTAGAGTTAGTTCGCCAAGCCGAT
GCCGCGCTTTACCGTGCAAAATCAGCAGGCCGCAATTGCATACGGGTGATGAATGAGGAGTAA

Upstream 100 bases:

>100_bases
AACATTGACTACAATCAGGCAACCACTCGATTTTATCGCTGATACTATTCCTATGCGAATACCAGATAAGTGGTTTTATG
TTCCATCACGGAGCTAGCCT

Downstream 100 bases:

>100_bases
TACAGGATCTCAAGATTCAGCGTTTTGAATTAATCGCCGGCATACCCAATCTTCTCATTACAGAGCAACAGAGTTACAAC
GTTTAGCAGAGCCCATCGTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRPNRQQLIRSLFDEYIEMYSSRDDRLTHRFSENFSGYAGSSDQLVTDREEWVRITRQDFAQVPERIHIEMLALSLQDLA
DNLVVVTAFFHIHLPIPNPMLSRETARLVLIFRLEHKDWMIAHSGISIPYGLAHKGEIYPIARLEERNVELESMIKARTC
ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFNDHYGHLAGDDCLKQLASTLSQ
SGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLIQAIAIPHADTDLGIVTVSAGVAYLQPSNQQSHLELVRQAD
AALYRAKSAGRNCIRVMNEE

Sequences:

>Translated_340_residues
MRPNRQQLIRSLFDEYIEMYSSRDDRLTHRFSENFSGYAGSSDQLVTDREEWVRITRQDFAQVPERIHIEMLALSLQDLA
DNLVVVTAFFHIHLPIPNPMLSRETARLVLIFRLEHKDWMIAHSGISIPYGLAHKGEIYPIARLEERNVELESMIKARTC
ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFNDHYGHLAGDDCLKQLASTLSQ
SGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLIQAIAIPHADTDLGIVTVSAGVAYLQPSNQQSHLELVRQAD
AALYRAKSAGRNCIRVMNEE
>Mature_340_residues
MRPNRQQLIRSLFDEYIEMYSSRDDRLTHRFSENFSGYAGSSDQLVTDREEWVRITRQDFAQVPERIHIEMLALSLQDLA
DNLVVVTAFFHIHLPIPNPMLSRETARLVLIFRLEHKDWMIAHSGISIPYGLAHKGEIYPIARLEERNVELESMIKARTC
ELAEANRQLEILSNTDGLTNIGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFNDHYGHLAGDDCLKQLASTLSQ
SGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLIQAIAIPHADTDLGIVTVSAGVAYLQPSNQQSHLELVRQAD
AALYRAKSAGRNCIRVMNEE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=36.4161849710983, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=40.2366863905325, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=219, Percent_Identity=32.4200913242009, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=37.7906976744186, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=30.8176100628931, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=205, Percent_Identity=35.1219512195122, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=30.5555555555556, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=30.6451612903226, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87082007, Length=130, Percent_Identity=33.8461538461538, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=31.7365269461078, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=30.0653594771242, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38758; Mature: 38758

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPNRQQLIRSLFDEYIEMYSSRDDRLTHRFSENFSGYAGSSDQLVTDREEWVRITRQDF
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHH
AQVPERIHIEMLALSLQDLADNLVVVTAFFHIHLPIPNPMLSRETARLVLIFRLEHKDWM
HHCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHCCCCEEEEEEEEECCCCEE
IAHSGISIPYGLAHKGEIYPIARLEERNVELESMIKARTCELAEANRQLEILSNTDGLTN
EEECCCCCCCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
IGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFNDHYGHLAGDDCLKQLASTLSQ
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLIQAIAIPHADTDLGIVTVSAG
CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
VAYLQPSNQQSHLELVRQADAALYRAKSAGRNCIRVMNEE
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MRPNRQQLIRSLFDEYIEMYSSRDDRLTHRFSENFSGYAGSSDQLVTDREEWVRITRQDF
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHH
AQVPERIHIEMLALSLQDLADNLVVVTAFFHIHLPIPNPMLSRETARLVLIFRLEHKDWM
HHCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHCCCCEEEEEEEEECCCCEE
IAHSGISIPYGLAHKGEIYPIARLEERNVELESMIKARTCELAEANRQLEILSNTDGLTN
EEECCCCCCCCCCCCCCEEEEECHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
IGNRRLFDMMLQTEWSRGQRSNSSLALIMLDIDHFKQFNDHYGHLAGDDCLKQLASTLSQ
CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SGRRAGELVARYGGEEFVILLPNIDKQTVLDTAQHIHQLIQAIAIPHADTDLGIVTVSAG
CCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
VAYLQPSNQQSHLELVRQADAALYRAKSAGRNCIRVMNEE
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]