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The map label for this gene is dgdR [H]

Identifier: 160873384

GI number: 160873384

Start: 298000

End: 298869

Strand: Reverse

Name: dgdR [H]

Synonym: Sbal195_0258

Alternate gene names: 160873384

Gene position: 298869-298000 (Counterclockwise)

Preceding gene: 160873386

Following gene: 160873377

Centisome position: 5.59

GC content: 46.55

Gene sequence:

>870_bases
ATGTTAAAAATCGAATTACTCGAAAGTTTTATCGCTGTTGCAGAATGCGGCAATTTATCTAAAGCTGCCGATCAGATCTG
TCGAACGCAATCGACATTAAGCTTGCAGATAAAAAAACTGGAAGAGAGTGTCGGACAGCCTCTATTGCTGCGCGACAATA
AAGGCGTAACGCTCACCGATTCGGGTAAAACGCTACTTAACTACGCATACAAAATGATGCAGCTCAACTCCCAAGCGCTA
GACGATCTTAAAGATTGCCAAAACCGAGAGATAATCCGCCTTGGGGTGCCGACCGATTATATTACGCGCTACCTCAGTAG
CTGCTTATTGGAATTTATACGAGAGTTCACCTGTATAGAGTTGGTAATAGATACCGATGTCAGTGGTAATCTATTTAAAC
GCCTACACCAAGGGGAATTTGACTTAATTGTAGCCACTCACTGGCTGCCACCTGCCCATGGTGAACTGCTGTTTGAGCGT
AAGTTTCACTGGGTCGCAGCTAAAGCGGGCAATGCCCACAAGCGCGAAACGATTCCGATGGCACTGTACCCAGAGAATTG
CCCCATTCGTGCGCAAGTATTTGCGAATCATCAGCTCACGATGCGGCCGATAAATGTATTGTTATCGACGCCATCGCCAC
AAGCCTTATGCATGGCGGTAGAAAACGATCTCGCAATTGCGCCCATTGCCGAGTTTCGCATTGATAACAATATGCAGATC
TTAGATCCTGTCGAGCACCACCTGCCTGTGCTACCAGTGTTTAACGAAGCCCTGTATCTCAATCCCAACACGCAAACTAA
CGCTACCCAGCAGTTAATCACACTAATCAAAGCCAACGTCGAAAATCTAGCAGAAGCCAACGACAACTAG

Upstream 100 bases:

>100_bases
TAAACAAAAACATTGCAACCTCACAATCAAACGATAACAGGGTTTGTGACCAGTCGATATTGAGTAATACTGATACCACT
ATGAGCAAACTCAATACCCC

Downstream 100 bases:

>100_bases
CCCTTGCGTAAGAGACGATGAAGTGCCGCTATCGGGCACTTCGGCTTACTTAAACGACTGTTGCGGAAGGCGTTGCATTT
TATAGTAAACCCCATTCCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MLKIELLESFIAVAECGNLSKAADQICRTQSTLSLQIKKLEESVGQPLLLRDNKGVTLTDSGKTLLNYAYKMMQLNSQAL
DDLKDCQNREIIRLGVPTDYITRYLSSCLLEFIREFTCIELVIDTDVSGNLFKRLHQGEFDLIVATHWLPPAHGELLFER
KFHWVAAKAGNAHKRETIPMALYPENCPIRAQVFANHQLTMRPINVLLSTPSPQALCMAVENDLAIAPIAEFRIDNNMQI
LDPVEHHLPVLPVFNEALYLNPNTQTNATQQLITLIKANVENLAEANDN

Sequences:

>Translated_289_residues
MLKIELLESFIAVAECGNLSKAADQICRTQSTLSLQIKKLEESVGQPLLLRDNKGVTLTDSGKTLLNYAYKMMQLNSQAL
DDLKDCQNREIIRLGVPTDYITRYLSSCLLEFIREFTCIELVIDTDVSGNLFKRLHQGEFDLIVATHWLPPAHGELLFER
KFHWVAAKAGNAHKRETIPMALYPENCPIRAQVFANHQLTMRPINVLLSTPSPQALCMAVENDLAIAPIAEFRIDNNMQI
LDPVEHHLPVLPVFNEALYLNPNTQTNATQQLITLIKANVENLAEANDN
>Mature_289_residues
MLKIELLESFIAVAECGNLSKAADQICRTQSTLSLQIKKLEESVGQPLLLRDNKGVTLTDSGKTLLNYAYKMMQLNSQAL
DDLKDCQNREIIRLGVPTDYITRYLSSCLLEFIREFTCIELVIDTDVSGNLFKRLHQGEFDLIVATHWLPPAHGELLFER
KFHWVAAKAGNAHKRETIPMALYPENCPIRAQVFANHQLTMRPINVLLSTPSPQALCMAVENDLAIAPIAEFRIDNNMQI
LDPVEHHLPVLPVFNEALYLNPNTQTNATQQLITLIKANVENLAEANDN

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=270, Percent_Identity=27.4074074074074, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI157672245, Length=147, Percent_Identity=29.2517006802721, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=150, Percent_Identity=28.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=69, Percent_Identity=49.2753623188406, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=161, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=135, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32532; Mature: 32532

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIELLESFIAVAECGNLSKAADQICRTQSTLSLQIKKLEESVGQPLLLRDNKGVTLTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEC
SGKTLLNYAYKMMQLNSQALDDLKDCQNREIIRLGVPTDYITRYLSSCLLEFIREFTCIE
CCCHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEEE
LVIDTDVSGNLFKRLHQGEFDLIVATHWLPPAHGELLFERKFHWVAAKAGNAHKRETIPM
EEEECCCCCHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEHEEEEEECCCCCCCCCCCCE
ALYPENCPIRAQVFANHQLTMRPINVLLSTPSPQALCMAVENDLAIAPIAEFRIDNNMQI
EECCCCCCEEEEEEECCEEEEEEEEEEEECCCCCEEEEEECCCEEEEEHHHEEECCCCEE
LDPVEHHLPVLPVFNEALYLNPNTQTNATQQLITLIKANVENLAEANDN
ECCHHHCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKIELLESFIAVAECGNLSKAADQICRTQSTLSLQIKKLEESVGQPLLLRDNKGVTLTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEC
SGKTLLNYAYKMMQLNSQALDDLKDCQNREIIRLGVPTDYITRYLSSCLLEFIREFTCIE
CCCHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCEEEE
LVIDTDVSGNLFKRLHQGEFDLIVATHWLPPAHGELLFERKFHWVAAKAGNAHKRETIPM
EEEECCCCCHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEHEEEEEECCCCCCCCCCCCE
ALYPENCPIRAQVFANHQLTMRPINVLLSTPSPQALCMAVENDLAIAPIAEFRIDNNMQI
EECCCCCCEEEEEEECCEEEEEEEEEEEECCCCCEEEEEECCCEEEEEHHHEEECCCCEE
LDPVEHHLPVLPVFNEALYLNPNTQTNATQQLITLIKANVENLAEANDN
ECCHHHCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]