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The map label for this gene is yhjC [H]

Identifier: 160873375

GI number: 160873375

Start: 286084

End: 287007

Strand: Reverse

Name: yhjC [H]

Synonym: Sbal195_0249

Alternate gene names: 160873375

Gene position: 287007-286084 (Counterclockwise)

Preceding gene: 160873377

Following gene: 160873372

Centisome position: 5.37

GC content: 49.24

Gene sequence:

>924_bases
GTGCAAGATCGACTGCAAGCCATGCAAATTTTTATGCGGGTCGCTGAATTACAAAGCTTTACCCAAGCAAGCGTCAGCTT
AGGTCTATCGAAAACCCATGTGTCGAATGTGGTGGCGCAGTTCGAAACCTTTCTGGGTGCGCGCTTGTTGCAACGCACCA
CGCGGACGGTACGCTTAACCCAAGATGGCCAGAGCTGTTACGAGCGCTGTAAAAGTTTACTTGCGGAATTTCAAGAATTA
GAAAGCCTGTTCCAACTGCAAGCCGAGCAAGTATCTGGGCGGCTCAGAGTCGATATGTCGACAGGCATTGCCCGCAACTT
AGTGATCCCTAAACTGGCTGAGTTTATTGAGCAATATCCGCATATCGAGCTTGAACTAAGCAGCACGGATCGTAAGGTAG
ATGTGATTGCCGAAGGGTTCGATTGTGTGATTAGGGTCGGCAGTGTGCAGCAAGAAGGATTAATAGCGAAAAAGCTGGGG
CATTTTAAGATGCAGAACTGTGTCAGCCCAGCCTACATTGCCCAATACGGTAGACCCGAAAGCATTGCGGATCTCACCTT
ACACAACCACAAACTCGTCCACTACGTAAGCCAATTAGGTGGCACTGACTCAGGCTTTGAATATCAAGCTCCCCACACTC
ATCAAGGGAGCCTTACTATCCAACTGCCTAAATTGATTACGGTAAATAATGCCGATGCCTATAGCTCAGCCTGCTTGGCG
GGGCTGGGGATCATTCAAGTGCCCAGCATAGGGGTGGCTAAATATTTACACACTGGCGAGTTGGTCGAGATCCTGCCAAA
TTACCCAGCGCCGCCAATGCCAGTAAGCTTGCTCTACCCACACAGGCGGCACTTATCCAAACGCCTGCAAGTCTTTATGG
CATGGTTAAATCAGCAGATGACGCCGTTTTTAATCCCACATTAA

Upstream 100 bases:

>100_bases
GCCTTGAGGCCTAATTAACTGCACACAGCTTATTACTTGCAATTAACGAGATAAACACACTATAAATGCTAAGACTGTTA
ACCAATAAAGGACAATCGCC

Downstream 100 bases:

>100_bases
AGGGACTTTTCGATGGCTGCTAAACGCTGATCCAATTCGGCCATAGCGGCGGCCGTTTGCGGATCGCTTTGGGGATCAAC
AACTTCAATCAGCTTAAGTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCYERCKSLLAEFQEL
ESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYPHIELELSSTDRKVDVIAEGFDCVIRVGSVQQEGLIAKKLG
HFKMQNCVSPAYIAQYGRPESIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACLA
GLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWLNQQMTPFLIPH

Sequences:

>Translated_307_residues
MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCYERCKSLLAEFQEL
ESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYPHIELELSSTDRKVDVIAEGFDCVIRVGSVQQEGLIAKKLG
HFKMQNCVSPAYIAQYGRPESIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACLA
GLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWLNQQMTPFLIPH
>Mature_307_residues
MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLTQDGQSCYERCKSLLAEFQEL
ESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYPHIELELSSTDRKVDVIAEGFDCVIRVGSVQQEGLIAKKLG
HFKMQNCVSPAYIAQYGRPESIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACLA
GLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWLNQQMTPFLIPH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=46.0264900662252, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=33.4470989761092, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=29.9003322259136, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=28.8590604026846, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=29.9319727891156, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789440, Length=304, Percent_Identity=25.3289473684211, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787589, Length=302, Percent_Identity=26.158940397351, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789173, Length=194, Percent_Identity=29.3814432989691, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=305, Percent_Identity=24.5901639344262, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=299, Percent_Identity=23.4113712374582, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=309, Percent_Identity=24.5954692556634, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=165, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34369; Mature: 34369

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
QDGQSCYERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHHHHHHHHHCC
HIELELSSTDRKVDVIAEGFDCVIRVGSVQQEGLIAKKLGHFKMQNCVSPAYIAQYGRPE
CEEEEECCCCCEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCC
SIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACLA
CHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHH
GLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWLNQQM
CCCCEECCCCHHHHHHHCCHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC
TPFLIPH
CCCCCCC
>Mature Secondary Structure
MQDRLQAMQIFMRVAELQSFTQASVSLGLSKTHVSNVVAQFETFLGARLLQRTTRTVRLT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
QDGQSCYERCKSLLAEFQELESLFQLQAEQVSGRLRVDMSTGIARNLVIPKLAEFIEQYP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHCCHHHHHHHHHHHHHHHCC
HIELELSSTDRKVDVIAEGFDCVIRVGSVQQEGLIAKKLGHFKMQNCVSPAYIAQYGRPE
CEEEEECCCCCEEHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCC
SIADLTLHNHKLVHYVSQLGGTDSGFEYQAPHTHQGSLTIQLPKLITVNNADAYSSACLA
CHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHH
GLGIIQVPSIGVAKYLHTGELVEILPNYPAPPMPVSLLYPHRRHLSKRLQVFMAWLNQQM
CCCCEECCCCHHHHHHHCCHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC
TPFLIPH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]