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The map label for this gene is qseB [H]

Identifier: 160873368

GI number: 160873368

Start: 282188

End: 282847

Strand: Reverse

Name: qseB [H]

Synonym: Sbal195_0242

Alternate gene names: 160873368

Gene position: 282847-282188 (Counterclockwise)

Preceding gene: 160873369

Following gene: 160873367

Centisome position: 5.29

GC content: 51.52

Gene sequence:

>660_bases
ATGCGTTTGCTATTGATTGAAGATGATACTGATCTGGTCGCGCGCCTCATCCCCGCCCTTAACAAGGCGGGTTATACCGT
CGAGCACGCCGATAACGGTATCGACGGTGCCTTTTTAGGCGAAGAAGAAAACTTCGAAGCCGTGATCCTCGATCTCGGTT
TACCCGGCAAACCCGGTTTACAAGTCCTCGGCCAATGGCGACAAAAAGGCTTAGCCATGCCAGTGCTGATCCTCACCGCT
CGCGATGCGTGGCACGAGCGGGTCGATGGCCTCAAGGCGGGTGCCGATGATTACCTTGGCAAGCCTTTTCATATTGAAGA
ACTACTCGCAAGGCTCGAAGTGTTGATCCGCCGCCACTTTGGCCGCGCCGACAATGTGTTACAACATGCGGGCGTTTCCC
TCGATGTCGACAAACAAGCCGTCACCAATGTCGACGGTGAAGTGATAGAGCTGACTAAGATTGAATATCGCCTACTGCAT
TATTTAATGGTCAATCCCAGTAAAATCGTCTCTAAGTCAGAGCTCAGTGAACGCATTTACGAAGAAGATCAAATCAAGGA
CAGCAATGTCATCGAAGTGTACGTCAACCGCCTGCGCCAACGCTTAGGCAAGGATTATATCGAAACCCGTCGCGGCCAAG
GTTATCGACTCAAGGAGTAA

Upstream 100 bases:

>100_bases
GGATCATCTACGAGCTAGAAATCCTTCGTGACGATGGCATAGTGTATGAAATCAAGATTGACGCCAAAACCGGCGAGTGG
CTAAAGGAAAAGGTCGACTG

Downstream 100 bases:

>100_bases
AAGGCGTGTATTCACTCAAGGGTTATCTGACGCGCAATCTGCTGATCACGCTCACCTTTGCCATGGTGCTGCTACTGTAT
TTTCTGTACCAAGGTATTCA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQVLGQWRQKGLAMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLH
YLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYRLKE

Sequences:

>Translated_219_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQVLGQWRQKGLAMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLH
YLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYRLKE
>Mature_219_residues
MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGLQVLGQWRQKGLAMPVLILTA
RDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLH
YLMVNPSKIVSKSELSERIYEEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYRLKE

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=219, Percent_Identity=46.1187214611872, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=37.4429223744292, Blast_Score=161, Evalue=2e-41,
Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=40.0921658986175, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=36, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=34.3891402714932, Blast_Score=128, Evalue=2e-31,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=33.7837837837838, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=30.8035714285714, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=30.5309734513274, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=30.316742081448, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=31.858407079646, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=30.0884955752212, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790863, Length=228, Percent_Identity=28.5087719298246, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788394, Length=221, Percent_Identity=28.9592760180996, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24853; Mature: 24853

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL
CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHC
GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY
CCHHHHHHHCCCCEECCHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYRLKE
HHHCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL
CEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF
HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHC
GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY
CCHHHHHHHCCCCEECCHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
EEDQIKDSNVIEVYVNRLRQRLGKDYIETRRGQGYRLKE
HHHCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]