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The map label for this gene is yybR

Identifier: 16081106

GI number: 16081106

Start: 4167622

End: 4167999

Strand: Reverse

Name: yybR

Synonym: BSU40540

Alternate gene names: 16081106

Gene position: 4167999-4167622 (Counterclockwise)

Preceding gene: 16081108

Following gene: 255767874

Centisome position: 98.87

GC content: 45.24

Gene sequence:

>378_bases
ATGAGTGAAAAAAAGAATATATACCCGAACAAAGAAGGCTGTCCAGTTGAATTCACTCTAGATGTCATTGGCGGAAAGTG
GAAAGGAATTCTTTTTTATCACATGATAGATGGCAAGAAACGATTTAATGAGTTTCGGCGAATCTGCCCGAGTATTACTC
AAAGAATGCTTACTCTCCAGCTGAGGGAGCTGGAAGCGGACGGCATCGTGCACCGTGAGGTTTATCACCAGGTGCCGCCC
AAGGTAGAGTACTCTCTGACGGAATTTGGGCGCACGCTTGAACCGATTGTTTTGCAAATGAAAGAATGGGGAGAATCCAA
CAGAGACGTGCTGGAATCTTATCGTTCGAACGGCTTAGTGAAGGATCAGCAGAAATAG

Upstream 100 bases:

>100_bases
CATTTTCTTTGAGCTAAGGAGAAAAGGTGTGTAAAATACTGGGTAGATTAGTTGCAAAATGTAATGTAGTATCAAAAAAG
GTACTATTGGAGGGTCAAGA

Downstream 100 bases:

>100_bases
CAGCAAAGGGAACTCCTTTGCTGCTTGTTTTATTTCATTGAAATGGCTCTGTTGGCGTTTCTGACATCGTTTTTCAACAG
TTCAGAAAGGTTGTAAGACG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSEKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPP
KVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLVKDQQK

Sequences:

>Translated_125_residues
MSEKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPP
KVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLVKDQQK
>Mature_124_residues
SEKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPK
VEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLVKDQQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87082391, Length=96, Percent_Identity=34.375, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYBR_BACSU (P37486)

Other databases:

- EMBL:   D26185
- EMBL:   AL009126
- PIR:   S65979
- RefSeq:   NP_391934.1
- ProteinModelPortal:   P37486
- SMR:   P37486
- EnsemblBacteria:   EBBACT00000003142
- GeneID:   937825
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40540
- NMPDR:   fig|224308.1.peg.4060
- GenoList:   BSU40540
- GeneTree:   EBGT00070000031789
- HOGENOM:   HBG752497
- OMA:   GIIRRES
- PhylomeDB:   P37486
- ProtClustDB:   CLSK888200
- BioCyc:   BSUB:BSU40540-MONOMER
- GO:   GO:0006350
- InterPro:   IPR002577
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF01638 DUF24

EC number: NA

Molecular weight: Translated: 14731; Mature: 14600

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQ
CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLV
HHHHCCCCCHHHHHHHHCCCCCEECHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
KDQQK
CCCCC
>Mature Secondary Structure 
SEKKNIYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFRRICPSITQRMLTLQ
CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLESYRSNGLV
HHHHCCCCCHHHHHHHHCCCCCEECHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
KDQQK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377