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The map label for this gene is yycI

Identifier: 16081090

GI number: 16081090

Start: 4149667

End: 4150509

Strand: Reverse

Name: yycI

Synonym: BSU40380

Alternate gene names: 16081090

Gene position: 4150509-4149667 (Counterclockwise)

Preceding gene: 16081091

Following gene: 255767871

Centisome position: 98.46

GC content: 39.74

Gene sequence:

>843_bases
GTGGAGTGGAATAAGACAAAATCAATCTTCATCGTTGCCTTCCTCATTTTAGATATTTTCTTAGGCTATCAGTTTTTTCA
AAAATGGCAGGCTACCGGCAAAGAATATGAAGTCATTAAAAATGATGTCGAGCATGACATGAAGGCCGATCATATCACGT
ATGAAGGCTTGAATAAGGAAGCAACAGAAGGCTATCGGATCACGGCAAATCAAAAGTCTTTCTCCAAGGAGGAAATTGAG
GCGCTGAAGGATCAAAAGCCTTTGATGGACATGCCTAGTGATGATCATAAAGTAACGAGCCTGAAAATGAAGTTTGCAAA
TCCAATCGCACTATCAAAGAAGGATATCGAGGACGATGCTCAGGCACTTGTTTCTTCGAAAATTCAAGATGGCGAAAAAT
ATAAGCTTTGGAAGGTTGATAAATCGAAGAAAGAAATTATTTTCTTCCAAACGTACGAAGGTCATTATATTTACCAAAAG
ACCGACAATCCCTCTAATATGATCGGGCAAGTGGTGCTGCACTTAAACGGTAAAAACGAGGTTGTGTCATACGACCAGAC
TACGCTTGAGACCTTCAAGCAAATCCAGAAAGAAAGCTTAATTACTGAAATGGATGCGGTTGAGCTATTGTACTATCAAA
ATCAATTAAAAGAATACAGCACTGTGAAGAGCTGTAAATTCGGCTATGTAGCACAATATCCGCTGACAAGTACGCAGGTG
CTGGCGCCGGTATGGAGAATTACGGTCGAGTACGAGAAAAAAGTGAACGGTGAGAAAAAGACAGTACAAGAGTATTTTAC
TGTGAATGCTTTGGAGAGTACGATTTTAGATACAGATCAATGA

Upstream 100 bases:

>100_bases
GATGATCCTCTCGTTGAACTGGAACCGGTTTGGGCGATGAAAGTAAATGGAAAAATTGTGCCGATTACAAAGGATTTATT
GAGGAAGGAGGGGGCTAACA

Downstream 100 bases:

>100_bases
AAATAATGGAGTGAGACAAACATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGA
AACAGAGGATCACGCATTTT

Product: regulator of YycFG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIE
ALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQK
TDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV
LAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ

Sequences:

>Translated_280_residues
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIE
ALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQK
TDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV
LAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ
>Mature_280_residues
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKEATEGYRITANQKSFSKEEIE
ALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDAQALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQK
TDNPSNMIGQVVLHLNGKNEVVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV
LAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ

Specific function: Together with yycH, regulates the activity of the two- component system yycF/yycG

COG id: COG4853

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYCI_BACSU (Q45612)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   H70089
- RefSeq:   NP_391918.1
- PDB:   2O3O
- PDBsum:   2O3O
- ProteinModelPortal:   Q45612
- SMR:   Q45612
- EnsemblBacteria:   EBBACT00000001079
- GeneID:   937765
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40380
- NMPDR:   fig|224308.1.peg.4044
- GenoList:   BSU40380
- GeneTree:   EBGT00050000001384
- HOGENOM:   HBG338519
- OMA:   LINNNMV
- ProtClustDB:   CLSK888190
- BioCyc:   BSUB:BSU40380-MONOMER
- InterPro:   IPR018604

Pfam domain/function: PF09648 YycI

EC number: NA

Molecular weight: Translated: 32594; Mature: 32594

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x121d4fec)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCC
ATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDA
CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEECCCCCCHHHH
QALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNE
HHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCEEEEECCCCHHHHHEEEEEEECCCCC
VVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
LAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ
HHHHHHEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MEWNKTKSIFIVAFLILDIFLGYQFFQKWQATGKEYEVIKNDVEHDMKADHITYEGLNKE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCCC
ATEGYRITANQKSFSKEEIEALKDQKPLMDMPSDDHKVTSLKMKFANPIALSKKDIEDDA
CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEECCCCCCHHHH
QALVSSKIQDGEKYKLWKVDKSKKEIIFFQTYEGHYIYQKTDNPSNMIGQVVLHLNGKNE
HHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCEEEEECCCCHHHHHEEEEEEECCCCC
VVSYDQTTLETFKQIQKESLITEMDAVELLYYQNQLKEYSTVKSCKFGYVAQYPLTSTQV
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHH
LAPVWRITVEYEKKVNGEKKTVQEYFTVNALESTILDTDQ
HHHHHHEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377