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The map label for this gene is yycS

Identifier: 16081076

GI number: 16081076

Start: 4135351

End: 4135764

Strand: Direct

Name: yycS

Synonym: BSU40240

Alternate gene names: 16081076

Gene position: 4135351-4135764 (Clockwise)

Preceding gene: 16081071

Following gene: 16081082

Centisome position: 98.1

GC content: 41.3

Gene sequence:

>414_bases
TTGCGCTTTAGATGGGTTTGGCTTTTTGTGATTATGTTGCTGCTTGCTGAGTGTCAGCCATCTTATTGGGTGTTGGAGAA
GGATCGAATCGGTGAAGGCAGTCCAGACTTAGAAATATACGCTAATTATCTCCAAATGCATGATGACGTGAAAGGATATC
AAGTCTTCACCATATCAGAAGGCAAAAAAATGGTCGTCGTGTCTCTCGGAAGCAGCGAGAAAGATAAGAAGCTTGAAGTG
TCGGACGTCAAATTCTCATCTAAAGAAACGATTGTAACTGTGGAGCGAAAACCTGCTCCTACGGCAAATGAGAAAAACCC
TTTTATTTTGATTGGACTGGACAAAATTGAAGGGGATTTAATTGTTCAAGACGAAACAGGAGATCGCTTTGAAGAAACGG
ATTACCAGCAATAA

Upstream 100 bases:

>100_bases
CGGGCTGAGTTTTATCCACAATTCGACAAACAAGCTGTTGATGACTCTATTTCGCTCGTGTGTTAGTTTGGATGTAACCG
ATGTGTGGGGAGGTCTGCAT

Downstream 100 bases:

>100_bases
AGCCGGCGTTCTGAGAACGTCCGGCTTTTTCTTTTACTTCAATGTCCCATGCGGGTCGATGACGAATTTTTTGGCTGCGC
CTTTGTCGAAGTCGCTGTAG

Product: integrase/transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MRFRWVWLFVIMLLLAECQPSYWVLEKDRIGEGSPDLEIYANYLQMHDDVKGYQVFTISEGKKMVVVSLGSSEKDKKLEV
SDVKFSSKETIVTVERKPAPTANEKNPFILIGLDKIEGDLIVQDETGDRFEETDYQQ

Sequences:

>Translated_137_residues
MRFRWVWLFVIMLLLAECQPSYWVLEKDRIGEGSPDLEIYANYLQMHDDVKGYQVFTISEGKKMVVVSLGSSEKDKKLEV
SDVKFSSKETIVTVERKPAPTANEKNPFILIGLDKIEGDLIVQDETGDRFEETDYQQ
>Mature_137_residues
MRFRWVWLFVIMLLLAECQPSYWVLEKDRIGEGSPDLEIYANYLQMHDDVKGYQVFTISEGKKMVVVSLGSSEKDKKLEV
SDVKFSSKETIVTVERKPAPTANEKNPFILIGLDKIEGDLIVQDETGDRFEETDYQQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYCS_BACSU (Q45603)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   G70090
- RefSeq:   NP_391904.1
- EnsemblBacteria:   EBBACT00000003630
- GeneID:   938490
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40240
- NMPDR:   fig|224308.1.peg.4030
- GenoList:   BSU40240
- GeneTree:   EBGT00050000004039
- ProtClustDB:   CLSK2752577
- BioCyc:   BSUB:BSU40240-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15826; Mature: 15826

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFRWVWLFVIMLLLAECQPSYWVLEKDRIGEGSPDLEIYANYLQMHDDVKGYQVFTISE
CCEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
GKKMVVVSLGSSEKDKKLEVSDVKFSSKETIVTVERKPAPTANEKNPFILIGLDKIEGDL
CCEEEEEEECCCCCCCEEEEECEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCE
IVQDETGDRFEETDYQQ
EEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRFRWVWLFVIMLLLAECQPSYWVLEKDRIGEGSPDLEIYANYLQMHDDVKGYQVFTISE
CCEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECC
GKKMVVVSLGSSEKDKKLEVSDVKFSSKETIVTVERKPAPTANEKNPFILIGLDKIEGDL
CCEEEEEEECCCCCCCEEEEECEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCE
IVQDETGDRFEETDYQQ
EEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377