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The map label for this gene is yydK

Identifier: 16081065

GI number: 16081065

Start: 4123193

End: 4123903

Strand: Direct

Name: yydK

Synonym: BSU40130

Alternate gene names: 16081065

Gene position: 4123193-4123903 (Clockwise)

Preceding gene: 16081062

Following gene: 255767866

Centisome position: 97.81

GC content: 43.88

Gene sequence:

>711_bases
ATGTTAAAATACCAGCAAATCGCAACGGAAATTGAAACATATATAGAAGAACACCAGCTTCAGCAGGGAGACAAACTGCC
AGTCCTAGAAACCCTCATGGCCCAGTTTGAAGTCAGCAAAAGCACCATCACAAAGTCCCTCGAGCTATTAGAGCAAAAAG
GCGCGATCTTTCAGGTCAGAGGAAGCGGCATTTTCGTCAGAAAACATAAACGAAAAGGCTATATCAGCCTTCTGTCGAAT
CAGGGATTTAAAAAAGATCTCGAGGATTTCAACGTCACCTCAAAAGTCATCGAACTGGACGTGAGAAAGCCAACACCGGA
AGCGGCGGAAAACCTGAACATCGGAATGGACGAGGACATCTACTATGTCAAAAGGGTCCGCTACATCAACGGCCAGACCC
TTTGCTACGAAGAATCCTATTACACCAAATCCATCGTGACGTATTTAAACAACGAAATCGTCTCCCACTCCATCTTCCAT
TACATCCGGGAAGGACTGGGGTTGAAGATTGGTTTTTCTGATTTGTTTCTGCACGTGGGCCAGCTTAATGAGGAAGAAGC
GGAATATTTGGGATTAGAGGCTGGACTGCCGAAGCTGTATATAGAAAGTATTTTTCACCTGACAAATGGGCAGCCGTTTG
ATTACTCGAAGATTTCGTATAATTATGAGCAGTCGCAGTTTGTGGTACAGGCTAATAGTTTTTTATTATAG

Upstream 100 bases:

>100_bases
ATCAATTCCGAAACAAAATATTTACGCACTAACTATCATTGTAAGCGGTTTATGCTATAATTTTGACAAGTGAAACTAAA
CGAATAAATGAGGAATGCGT

Downstream 100 bases:

>100_bases
GGCTCTTCACTACGGTAGGTGGTCGACATGTACAAAATTATCATTCCTGCCATACTAGCCATCTTTGCGCTCTGGATACT
CTTACAGATTTCACTAGAGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKGYISLLSN
QGFKKDLEDFNVTSKVIELDVRKPTPEAAENLNIGMDEDIYYVKRVRYINGQTLCYEESYYTKSIVTYLNNEIVSHSIFH
YIREGLGLKIGFSDLFLHVGQLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANSFLL

Sequences:

>Translated_236_residues
MLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKGYISLLSN
QGFKKDLEDFNVTSKVIELDVRKPTPEAAENLNIGMDEDIYYVKRVRYINGQTLCYEESYYTKSIVTYLNNEIVSHSIFH
YIREGLGLKIGFSDLFLHVGQLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANSFLL
>Mature_236_residues
MLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKGYISLLSN
QGFKKDLEDFNVTSKVIELDVRKPTPEAAENLNIGMDEDIYYVKRVRYINGQTLCYEESYYTKSIVTYLNNEIVSHSIFH
YIREGLGLKIGFSDLFLHVGQLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANSFLL

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790118, Length=230, Percent_Identity=27.8260869565217, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790540, Length=217, Percent_Identity=24.8847926267281, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYDK_BACSU (Q45591)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   A70092
- RefSeq:   NP_391893.1
- PDB:   3BWG
- PDBsum:   3BWG
- ProteinModelPortal:   Q45591
- SMR:   Q45591
- EnsemblBacteria:   EBBACT00000002579
- GeneID:   937726
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40130
- NMPDR:   fig|224308.1.peg.4019
- GenoList:   BSU40130
- GeneTree:   EBGT00050000000778
- HOGENOM:   HBG696565
- OMA:   GSGIFVR
- PhylomeDB:   Q45591
- ProtClustDB:   CLSK2752576
- BioCyc:   BSUB:BSU40130-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00345
- SMART:   SM00866

Pfam domain/function: PF00392 GntR; PF07702 UTRA

EC number: NA

Molecular weight: Translated: 27279; Mature: 27279

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GSGIFVRKHKRKGYISLLSNQGFKKDLEDFNVTSKVIELDVRKPTPEAAENLNIGMDEDI
CCEEEEEECCCCCCEEHHCCCCCHHHHHHCCHHHHHEEEECCCCCHHHHHCCCCCCCCCH
YYVKRVRYINGQTLCYEESYYTKSIVTYLNNEIVSHSIFHYIREGLGLKIGFSDLFLHVG
HHHHHEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHC
QLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANSFLL
CCCHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR
CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
GSGIFVRKHKRKGYISLLSNQGFKKDLEDFNVTSKVIELDVRKPTPEAAENLNIGMDEDI
CCEEEEEECCCCCCEEHHCCCCCHHHHHHCCHHHHHEEEECCCCCHHHHHCCCCCCCCCH
YYVKRVRYINGQTLCYEESYYTKSIVTYLNNEIVSHSIFHYIREGLGLKIGFSDLFLHVG
HHHHHEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHC
QLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANSFLL
CCCHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377