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The map label for this gene is yxbF

Identifier: 16081036

GI number: 16081036

Start: 4092695

End: 4093837

Strand: Reverse

Name: yxbF

Synonym: BSU39850

Alternate gene names: 16081036

Gene position: 4093837-4092695 (Counterclockwise)

Preceding gene: 255767855

Following gene: 16081034

Centisome position: 97.11

GC content: 45.93

Gene sequence:

>1143_bases
GTGCCGGAATCTGCCGAAGCTCAAGTGAAAGAGGCGCTGCTGGCTTTATTGAAAGATAGAGATATTCAACACATCACAAT
GAAAGAAATCGCTGAGAAGGCCAAAGTGAGCCGCGGATCGCTCTACCTTTATTATGAGGATAAGTTTTCAATCATTGAGG
ATGTGATCGAAGACATGAAGGAAGGACTGGGCAAAGCGCTTTTTGACGCCTTCAGTCATATGGATACCCTTCATTTGAAC
AAAAAACGGCAAACGGTGCATCCGACGCTGTCCTTTGTTCATGAGCATCGTTCCTTTTTTTCTGTGATGATGAACAGAGG
ACATTTTCATCGTTTTTTTAAGGATGTGTTTCAGCAGGATGTGCTGCTGGCTCCGATCCATGTGAATTTAACGCCGATTG
AACGGGACATTTATGGACATTATCGGGCCTTGTACACGTACGCGATTATCCTGTATTGGCTGAATGAGGATGCGGCCGCG
TCTCCTGAAGCCATCAGCCAGAAGGTATGGGAGCTTGTTTCTCAAAAGCGGTTTTATTGGCTGTTTGGAAAAGCTGTGCC
AGGAGAGCGAGAGAAGGAGAAGCAAATCGACAGGCGGGTGGTTCGAACGAGAGAGGCGCTGCAGAAGGCATTTCTGGATG
TATTGGCGGAGAAACAAGACTACGCGGGCATCACGATTTCAGATATTACGCGTAAAAGCAATATCCGCCGTGCAACCTTT
TATGATCACTATGCCAATAAGGAGGAATTGCTCCAAACCATGATACAGCGATCATGTGCGGAGATCATTGATCACCTGAC
GATTGCCTCCAGCCCGAATGAATTTTCCTTAAAGGAAGCGGAGAAGGCGCTCGCCATTCTGCTTTCTGCTTTGTCAAACA
TGCCCATTGTCCATTTTCTCAATCGGGAATGGGGTGTTCCTCATGTGATACCTGATATGTTCAAAGCGCTGGAATCGTTT
TATCTGCATCAGCAAACTGATATTCACGCAGAGAAAAAGCTTTATGCCCATTATGTATCCGCAATGATTATCGGGTTGCT
TTTGTATCGGCTGGATGAAGGAAAGGCGCATCCGCCTGAAGTGCTGGCGAGGGAGTTTTTGCAGTTTTTGGATGTGAAGA
AATATAAGGTTGTATTGCTTTAA

Upstream 100 bases:

>100_bases
TTATAAGGTGGTACCTTTTCTGTAAGAAAGACAACGGTGAACCATCTATACGTTACCGTACATATATCTAAGATCTGTCT
AATGATTGGAGGTGTCTTTT

Downstream 100 bases:

>100_bases
AAGACAAAAAGAGAGGGGGCTCCCTCTCTTATTTCGTTTCTTCCTTCCATTTCTCCTCAATCAGCATCTTCCCAGGCCAT
GTGTACGCCATGATGCCGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MPESAEAQVKEALLALLKDRDIQHITMKEIAEKAKVSRGSLYLYYEDKFSIIEDVIEDMKEGLGKALFDAFSHMDTLHLN
KKRQTVHPTLSFVHEHRSFFSVMMNRGHFHRFFKDVFQQDVLLAPIHVNLTPIERDIYGHYRALYTYAIILYWLNEDAAA
SPEAISQKVWELVSQKRFYWLFGKAVPGEREKEKQIDRRVVRTREALQKAFLDVLAEKQDYAGITISDITRKSNIRRATF
YDHYANKEELLQTMIQRSCAEIIDHLTIASSPNEFSLKEAEKALAILLSALSNMPIVHFLNREWGVPHVIPDMFKALESF
YLHQQTDIHAEKKLYAHYVSAMIIGLLLYRLDEGKAHPPEVLAREFLQFLDVKKYKVVLL

Sequences:

>Translated_380_residues
MPESAEAQVKEALLALLKDRDIQHITMKEIAEKAKVSRGSLYLYYEDKFSIIEDVIEDMKEGLGKALFDAFSHMDTLHLN
KKRQTVHPTLSFVHEHRSFFSVMMNRGHFHRFFKDVFQQDVLLAPIHVNLTPIERDIYGHYRALYTYAIILYWLNEDAAA
SPEAISQKVWELVSQKRFYWLFGKAVPGEREKEKQIDRRVVRTREALQKAFLDVLAEKQDYAGITISDITRKSNIRRATF
YDHYANKEELLQTMIQRSCAEIIDHLTIASSPNEFSLKEAEKALAILLSALSNMPIVHFLNREWGVPHVIPDMFKALESF
YLHQQTDIHAEKKLYAHYVSAMIIGLLLYRLDEGKAHPPEVLAREFLQFLDVKKYKVVLL
>Mature_379_residues
PESAEAQVKEALLALLKDRDIQHITMKEIAEKAKVSRGSLYLYYEDKFSIIEDVIEDMKEGLGKALFDAFSHMDTLHLNK
KRQTVHPTLSFVHEHRSFFSVMMNRGHFHRFFKDVFQQDVLLAPIHVNLTPIERDIYGHYRALYTYAIILYWLNEDAAAS
PEAISQKVWELVSQKRFYWLFGKAVPGEREKEKQIDRRVVRTREALQKAFLDVLAEKQDYAGITISDITRKSNIRRATFY
DHYANKEELLQTMIQRSCAEIIDHLTIASSPNEFSLKEAEKALAILLSALSNMPIVHFLNREWGVPHVIPDMFKALESFY
LHQQTDIHAEKKLYAHYVSAMIIGLLLYRLDEGKAHPPEVLAREFLQFLDVKKYKVVLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH tetR-type DNA-binding domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXBF_BACSU (P46330)

Other databases:

- EMBL:   AB005554
- EMBL:   AL009126
- PIR:   A70073
- RefSeq:   NP_391864.1
- ProteinModelPortal:   P46330
- EnsemblBacteria:   EBBACT00000002680
- GeneID:   937637
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39850
- NMPDR:   fig|224308.1.peg.3990
- GenoList:   BSU39850
- GeneTree:   EBGT00050000000427
- HOGENOM:   HBG338494
- OMA:   DHYANKE
- ProtClustDB:   CLSK888179
- BioCyc:   BSUB:BSU39850-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 44284; Mature: 44153

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPESAEAQVKEALLALLKDRDIQHITMKEIAEKAKVSRGSLYLYYEDKFSIIEDVIEDMK
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
EGLGKALFDAFSHMDTLHLNKKRQTVHPTLSFVHEHRSFFSVMMNRGHFHRFFKDVFQQD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VLLAPIHVNLTPIERDIYGHYRALYTYAIILYWLNEDAAASPEAISQKVWELVSQKRFYW
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEE
LFGKAVPGEREKEKQIDRRVVRTREALQKAFLDVLAEKQDYAGITISDITRKSNIRRATF
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHH
YDHYANKEELLQTMIQRSCAEIIDHLTIASSPNEFSLKEAEKALAILLSALSNMPIVHFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC
NREWGVPHVIPDMFKALESFYLHQQTDIHAEKKLYAHYVSAMIIGLLLYRLDEGKAHPPE
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VLAREFLQFLDVKKYKVVLL
HHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
PESAEAQVKEALLALLKDRDIQHITMKEIAEKAKVSRGSLYLYYEDKFSIIEDVIEDMK
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
EGLGKALFDAFSHMDTLHLNKKRQTVHPTLSFVHEHRSFFSVMMNRGHFHRFFKDVFQQD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VLLAPIHVNLTPIERDIYGHYRALYTYAIILYWLNEDAAASPEAISQKVWELVSQKRFYW
CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEE
LFGKAVPGEREKEKQIDRRVVRTREALQKAFLDVLAEKQDYAGITISDITRKSNIRRATF
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHH
YDHYANKEELLQTMIQRSCAEIIDHLTIASSPNEFSLKEAEKALAILLSALSNMPIVHFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC
NREWGVPHVIPDMFKALESFYLHQQTDIHAEKKLYAHYVSAMIIGLLLYRLDEGKAHPPE
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VLAREFLQFLDVKKYKVVLL
HHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377