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The map label for this gene is ywkD

Identifier: 16080755

GI number: 16080755

Start: 3798281

End: 3798667

Strand: Direct

Name: ywkD

Synonym: BSU37020

Alternate gene names: 16080755

Gene position: 3798281-3798667 (Clockwise)

Preceding gene: 16080751

Following gene: 16080756

Centisome position: 90.1

GC content: 46.51

Gene sequence:

>387_bases
ATGTTGCTGAAATCCATACATCATATTGCAATCATATGTTCAGATTACGAAAAGTCGAAAGCTTTCTACGTACATAAGCT
TGGTTTTCAGGTGATTCAAGAAACGTACCGCGAAGAGCGCGGCTCCTATAAGCTTGATTTGTCGCTTAACGGCTCGTATG
TCATTGAGCTGTTCTCGTTTCCCGATCCGCCCGAACGACAAACCCGGCCTGAAGCCGCAGGCCTGCGCCACCTCGCCTTT
ACAGTCGGCAGCTTGGATAAAGCTGTTCAAGAGCTTCATGAAAAAGGAATCGAAACAGAGCCAATCAGAACAGATCCGCT
GACCGGCAAGCGTTTCACCTTCTTTTTTGATCCTGACCAGCTTCCATTAGAACTGTATGAACAATAA

Upstream 100 bases:

>100_bases
GTAACATTCTCATTATAGTATAGTGATTAACCCCAGTCAAAAGCATTTCAATCCCAGCTGGAAAAGCTCCCTCTGCTATA
CTGGAATTCGAGGAGGGATG

Downstream 100 bases:

>100_bases
CAGTTTTTGAAGAAAAAAAGGAGATACCCACTTTCTTTGCCGAATCTTTTCTTGTTTTGTCTAACGGGAAGGGAACCGCA
TTCTATGGTCGAATACCTAG

Product: lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MLLKSIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPERQTRPEAAGLRHLAF
TVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLELYEQ

Sequences:

>Translated_128_residues
MLLKSIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPERQTRPEAAGLRHLAF
TVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLELYEQ
>Mature_128_residues
MLLKSIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSFPDPPERQTRPEAAGLRHLAF
TVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQLPLELYEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081697, Length=126, Percent_Identity=65.0793650793651, Blast_Score=167, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWKD_BACSU (P45871)

Other databases:

- EMBL:   Z49782
- EMBL:   AL009126
- PIR:   S55436
- RefSeq:   NP_391583.1
- ProteinModelPortal:   P45871
- SMR:   P45871
- EnsemblBacteria:   EBBACT00000000205
- GeneID:   937039
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37020
- NMPDR:   fig|224308.1.peg.3709
- GenoList:   BSU37020
- GeneTree:   EBGT00050000001951
- HOGENOM:   HBG704761
- OMA:   RNSYKLD
- PhylomeDB:   P45871
- ProtClustDB:   CLSK888050
- BioCyc:   BSUB:BSU37020-MONOMER
- InterPro:   IPR004360

Pfam domain/function: PF00903 Glyoxalase

EC number: NA

Molecular weight: Translated: 14833; Mature: 14833

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKSIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSF
CCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECC
PDPPERQTRPEAAGLRHLAFTVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC
LPLELYEQ
CCHHCCCC
>Mature Secondary Structure
MLLKSIHHIAIICSDYEKSKAFYVHKLGFQVIQETYREERGSYKLDLSLNGSYVIELFSF
CCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECC
PDPPERQTRPEAAGLRHLAFTVGSLDKAVQELHEKGIETEPIRTDPLTGKRFTFFFDPDQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC
LPLELYEQ
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377