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The map label for this gene is ywmD

Identifier: 16080726

GI number: 16080726

Start: 3774655

End: 3775329

Strand: Reverse

Name: ywmD

Synonym: BSU36730

Alternate gene names: 16080726

Gene position: 3775329-3774655 (Counterclockwise)

Preceding gene: 16080727

Following gene: 16080725

Centisome position: 89.56

GC content: 44.89

Gene sequence:

>675_bases
ATGAAAAAATTGCTGGCTGCCGGTATCATTGGATTGTTGACTGTTTCCATTGCCTCCCCGTCTTTTGCCGCTGAGAAACA
GGCTGATACAAATGTAGCTGTTTTGTTTGACGGAAGCGGAAGCATGGTTCAAAAAACAGGAGGAGAGCGCAAAATAGACA
TTGCCAAAAAATCAGTAAAATCTTTTGCCGAACTTCTTCCAAAGGATACAAATCTTATGCTTCGCGTTTTCGGGCATGCA
GGGAACAATAAACTGTCCGGTAAAGCCCTTTCGTGCAGTACGACGGAAACCATTTACGGCCTTCATCCATATGAAGGGTC
TCTGTTTGACAATTCATTGAGTGAGCTCAAGCCGACTGGATGGACACCGATTGCCAAAGCACTTGCAGACACAAGAAAAG
AATTTGAAGCATTTGACGCAGACGGGAAAAACGTGGTGTATTTAATCACTGACGGTGAAGAAACGTGCGGCGGAGACCCT
GCGGCGGAAATCGAAAAGCTCCGTGCATCAAATGTGGATACGATTGTAAACATCATTGGCTTCAACTTTGATGTCAAGGG
TAATGAAGAGATGAAACAAGCAGCTGTCGCTGGCGGCGGAGAATATATTTCAGCGAACAGTGCGGATGAGTTCGAACAGG
CTTGGGAAAAAGAAGCACAAAAATTTACTGAGTAA

Upstream 100 bases:

>100_bases
AAAGGCAGCATGTCCTATATCTTTTTGCATTTTCGTATTCTAGCATAAAGAAGAATCCAACATATAGTTGGAAAATATGA
AAAAGAAAGGAAGTAATCAT

Downstream 100 bases:

>100_bases
GGAACCTAAAGATCAGGCGCTCCCCCAGGCGCCTTTTTTATTGGTTTAAAAACAGTTTGGGCGGGAATGATACCCTAAAA
AGGGGTTGAACATATGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVKSFAELLPKDTNLMLRVFGHA
GNNKLSGKALSCSTTETIYGLHPYEGSLFDNSLSELKPTGWTPIAKALADTRKEFEAFDADGKNVVYLITDGEETCGGDP
AAEIEKLRASNVDTIVNIIGFNFDVKGNEEMKQAAVAGGGEYISANSADEFEQAWEKEAQKFTE

Sequences:

>Translated_224_residues
MKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVKSFAELLPKDTNLMLRVFGHA
GNNKLSGKALSCSTTETIYGLHPYEGSLFDNSLSELKPTGWTPIAKALADTRKEFEAFDADGKNVVYLITDGEETCGGDP
AAEIEKLRASNVDTIVNIIGFNFDVKGNEEMKQAAVAGGGEYISANSADEFEQAWEKEAQKFTE
>Mature_224_residues
MKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVKSFAELLPKDTNLMLRVFGHA
GNNKLSGKALSCSTTETIYGLHPYEGSLFDNSLSELKPTGWTPIAKALADTRKEFEAFDADGKNVVYLITDGEETCGGDP
AAEIEKLRASNVDTIVNIIGFNFDVKGNEEMKQAAVAGGGEYISANSADEFEQAWEKEAQKFTE

Specific function: Unknown

COG id: COG2304

COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ywmC

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWMD_BACSU (P70961)

Other databases:

- EMBL:   Z81356
- EMBL:   AL009126
- PIR:   H70062
- RefSeq:   NP_391554.1
- ProteinModelPortal:   P70961
- EnsemblBacteria:   EBBACT00000001676
- GeneID:   936987
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU36730
- NMPDR:   fig|224308.1.peg.3680
- GenoList:   BSU36730
- GeneTree:   EBGT00050000000984
- HOGENOM:   HBG338404
- OMA:   IVNIIGF
- ProtClustDB:   CLSK888040
- BioCyc:   BSUB:BSU36730-MONOMER
- InterPro:   IPR002035
- SMART:   SM00327

Pfam domain/function: PF00092 VWA

EC number: NA

Molecular weight: Translated: 23965; Mature: 23965

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVK
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH
SFAELLPKDTNLMLRVFGHAGNNKLSGKALSCSTTETIYGLHPYEGSLFDNSLSELKPTG
HHHHHCCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCHHHCCHHHCCCCC
WTPIAKALADTRKEFEAFDADGKNVVYLITDGEETCGGDPAAEIEKLRASNVDTIVNIIG
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHC
FNFDVKGNEEMKQAAVAGGGEYISANSADEFEQAWEKEAQKFTE
CCCCCCCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLLAAGIIGLLTVSIASPSFAAEKQADTNVAVLFDGSGSMVQKTGGERKIDIAKKSVK
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH
SFAELLPKDTNLMLRVFGHAGNNKLSGKALSCSTTETIYGLHPYEGSLFDNSLSELKPTG
HHHHHCCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCHHHCCHHHCCCCC
WTPIAKALADTRKEFEAFDADGKNVVYLITDGEETCGGDPAAEIEKLRASNVDTIVNIIG
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHC
FNFDVKGNEEMKQAAVAGGGEYISANSADEFEQAWEKEAQKFTE
CCCCCCCCHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377