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The map label for this gene is ywsB

Identifier: 16080650

GI number: 16080650

Start: 3707144

End: 3707680

Strand: Direct

Name: ywsB

Synonym: BSU35970

Alternate gene names: 16080650

Gene position: 3707144-3707680 (Clockwise)

Preceding gene: 16080649

Following gene: 16080651

Centisome position: 87.94

GC content: 41.34

Gene sequence:

>537_bases
ATGAACAAACCAACAAAACTATTTTCAACATTAGCACTTGCGGCTGGAATGACTGCGGCGGCTGCTGGCGGCGCTGGCAC
GATCCATGCTCAACAGCCAGAAACAACGGTAAGCATTGATGATTTATACAGTTATCCGATTGATTCTTATTTGGTATCAG
CAGAGGCTCTAAATGTCAGAACGAAGCCTTCCGCATCAAGCCAGAAAGCCGATACGCTGCACTTAGGAGATAGCCTAAAG
CTGATTTCCTTCTCAAATGCTGACTGGGCAAAGGTTAAGTATAAAAATGGAAAAACAGGATTTGTATCCACTCATTACAT
TGTTAAAGCAGCGACAACGGTAAAAACCAAAACAAAAACAAAAGTGTATACATCCGCTGACGGAAAGAGCATTAAGACTC
TTCCAGCAGACACAAGCGTTTCTTTTTTAGGCTGGAGTAAAACGAATAAAGGCGGTTTTGATTTTGATTGGGTATTCGTT
GATTACGGCGGTACGACAGGTTATATGAAAACAAAGGATTTACACATGACAAAATAA

Upstream 100 bases:

>100_bases
ACTAGAAACACAAAAATAATTGTCTGATGTTTAGGAACCTGCGATAACGTGAATAGAGATATAGAATGAATTATTTCTCT
TACGTGAGGAGAGGAACGGC

Downstream 100 bases:

>100_bases
CTGAGAGGGATTCCGCATAAATGCGGAATCCCTTTTATTATGAATTGATTTGTCACATTCCCAAGATATTTCTCAGGAAA
TATTGTCGTATGCTGTGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVRTKPSASSQKADTLHLGDSLK
LISFSNADWAKVKYKNGKTGFVSTHYIVKAATTVKTKTKTKVYTSADGKSIKTLPADTSVSFLGWSKTNKGGFDFDWVFV
DYGGTTGYMKTKDLHMTK

Sequences:

>Translated_178_residues
MNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVRTKPSASSQKADTLHLGDSLK
LISFSNADWAKVKYKNGKTGFVSTHYIVKAATTVKTKTKTKVYTSADGKSIKTLPADTSVSFLGWSKTNKGGFDFDWVFV
DYGGTTGYMKTKDLHMTK
>Mature_178_residues
MNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVRTKPSASSQKADTLHLGDSLK
LISFSNADWAKVKYKNGKTGFVSTHYIVKAATTVKTKTKTKVYTSADGKSIKTLPADTSVSFLGWSKTNKGGFDFDWVFV
DYGGTTGYMKTKDLHMTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the extracellular medium in a strain lacking the wprA protease

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWSB_BACSU (P96729)

Other databases:

- EMBL:   Z92953
- EMBL:   AL009126
- PIR:   E70069
- RefSeq:   NP_391478.1
- HSSP:   P07751
- ProteinModelPortal:   P96729
- SMR:   P96729
- EnsemblBacteria:   EBBACT00000003322
- GeneID:   936850
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35970
- NMPDR:   fig|224308.1.peg.3604
- GenoList:   BSU35970
- GeneTree:   EBGT00050000000159
- HOGENOM:   HBG338654
- OMA:   STHYIVK
- ProtClustDB:   CLSK886909
- BioCyc:   BSUB:BSU35970-MONOMER
- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR001452
- SMART:   SM00326
- SMART:   SM00287

Pfam domain/function: PF08239 SH3_3

EC number: NA

Molecular weight: Translated: 19109; Mature: 19109

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVR
CCCHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCCEEEHHHHHCCCHHHEEEEHHHEEEE
TKPSASSQKADTLHLGDSLKLISFSNADWAKVKYKNGKTGFVSTHYIVKAATTVKTKTKT
CCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEEEEEEEEEECCCE
KVYTSADGKSIKTLPADTSVSFLGWSKTNKGGFDFDWVFVDYGGTTGYMKTKDLHMTK
EEEECCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCEECCC
>Mature Secondary Structure
MNKPTKLFSTLALAAGMTAAAAGGAGTIHAQQPETTVSIDDLYSYPIDSYLVSAEALNVR
CCCHHHHHHHHHHHHCCHHHCCCCCCEEECCCCCCEEEHHHHHCCCHHHEEEEHHHEEEE
TKPSASSQKADTLHLGDSLKLISFSNADWAKVKYKNGKTGFVSTHYIVKAATTVKTKTKT
CCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEEEEEEEEEECCCE
KVYTSADGKSIKTLPADTSVSFLGWSKTNKGGFDFDWVFVDYGGTTGYMKTKDLHMTK
EEEECCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377