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The map label for this gene is fliD

Identifier: 16080587

GI number: 16080587

Start: 3632911

End: 3634407

Strand: Reverse

Name: fliD

Synonym: BSU35340

Alternate gene names: 16080587

Gene position: 3634407-3632911 (Counterclockwise)

Preceding gene: 16080588

Following gene: 16080586

Centisome position: 86.21

GC content: 39.75

Gene sequence:

>1497_bases
ATGGTCACAAGAATAACAGGTCTGGCGTCAGGAATGGATATAGATGATATCGTATCAAAGCTGATGCAGACAGAAAGAGC
GCCGCTTGATAAGCTGACACAAAAAAAGCAGACTCTTGAATGGCAGCGTGACAGCTATCGTGAAGTAAACTCAAAAATAA
AAGAATTGCAAGATTATATGTCTAAAAATACGTTGACATATCCGAGCACGTATCAGAGCAAAACTGTGACAAGCTCTAAT
GAGTCTGTGTTAACTGCTACAGGAAGCGTAAGTGCGCCAAATTCTTCGTCTACTGTTGAAGTGGCGAGCTTGGCAACTGC
AGCAACGTATAAGGCAAACAATTATACGGGATACACACAAGGCGATTACAATTTGGCATTTAACGTTGTTGCGCCTGGCG
AAACAACAGCAAAAACAGTGAACATTAGTGTGACGAGTGCCGATACGATTGATAATGTGATTTCTAAACTTAACAGCTCA
GATCTAGGAGTATCAGCATTTAAAGATAAAATTTGGAATGGTACAGAGTACGTAGAAACGATTGCGTTTTCTTCTAAAGC
AACAGGTGCAGGAGGAAGCATACAGGCAGCAGACTCTGCTACAGCTGACTTTATGTCCGGTCAGCTTGGTTTTTCTTTGG
ATGCTGATAATAAGCTTACTGCTTACAAAGAAGGCACAAATGCCAAAGTCACAATCAACGGCTTTGAAATGGAGAAGCTG
ACAAACAATTTCACGGTGAATGGTGTTACTTATTCGATTAAAAATACAACTGCAGCCACAGGCCCTGTTACCACATCTGT
TTCTACTGATGTTGATGGGATTTATAACCAAATCAAAGAGTTTGTAGATAAATACAATGAACTGGTTGACAGCCTGAATG
AAAAGCTGAAAGAAGAAAAATACCGAGACTATACGCCACTCACGAGTGAACAAAAAGAAGCCATGTCCGATAAAGAGGTA
GAGCTCTGGGAGGAGAAGGCGAAAAGCGGATTGCTGAGAAACGATTCAAGCATCAGCACTGGCACGAACCAAATGCGGAC
TGACTTTTATACTCAAGTGAATGCGGATGGGAAAACCTATCAATTAACTGAATTTGGCATCACAACTTCAAGTGCTTACC
AACTGCGAGGGCACTTAGAGATTAACGAAGAGAAATTGAAAGCAAAAATAGCAGAAGATCCTCAAGGAGTTGCTAATCTT
TTTACAAGTGGAACAAATGATAGTAACTATAGCGATAAAGGTATTATGAAGCGGATTACTAATACACTTAGAAGTACTGT
GAAAAGTATTGAAGCTAAAGCTGGGAACTCGACAATGGGAGCTAGTAGCTATTCCATTGGAAAAAATTTAAACTCGATAA
GTACTGAAATAACTGATATGCAGGACAGATTGAATACCATAGAAAACCGCTATTATTCAAAATTCAGTGCAATGGATTCT
GCGATTCAAAAAATGAACGAACAAGCGTCCTATTTATCACAGCTTCTTGTACAATAA

Upstream 100 bases:

>100_bases
GCGAAATTCCACCAAAACGGTGGCTTGATTTTTATGCGGCTATGACTGAATTTCTTGGGTTATTTGTAGATGAAAAAAAG
TAGAATAGGAGTGGTTTGAG

Downstream 100 bases:

>100_bases
ATGTAATTTGGAGGATGACACATGGCGATCCAAAATCCATATACAGCCTATCAGCAAAATTCAGTGAATACGGCTACACC
CGGGGAGCTGACGCTTATGC

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MVTRITGLASGMDIDDIVSKLMQTERAPLDKLTQKKQTLEWQRDSYREVNSKIKELQDYMSKNTLTYPSTYQSKTVTSSN
ESVLTATGSVSAPNSSSTVEVASLATAATYKANNYTGYTQGDYNLAFNVVAPGETTAKTVNISVTSADTIDNVISKLNSS
DLGVSAFKDKIWNGTEYVETIAFSSKATGAGGSIQAADSATADFMSGQLGFSLDADNKLTAYKEGTNAKVTINGFEMEKL
TNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEFVDKYNELVDSLNEKLKEEKYRDYTPLTSEQKEAMSDKEV
ELWEEKAKSGLLRNDSSISTGTNQMRTDFYTQVNADGKTYQLTEFGITTSSAYQLRGHLEINEEKLKAKIAEDPQGVANL
FTSGTNDSNYSDKGIMKRITNTLRSTVKSIEAKAGNSTMGASSYSIGKNLNSISTEITDMQDRLNTIENRYYSKFSAMDS
AIQKMNEQASYLSQLLVQ

Sequences:

>Translated_498_residues
MVTRITGLASGMDIDDIVSKLMQTERAPLDKLTQKKQTLEWQRDSYREVNSKIKELQDYMSKNTLTYPSTYQSKTVTSSN
ESVLTATGSVSAPNSSSTVEVASLATAATYKANNYTGYTQGDYNLAFNVVAPGETTAKTVNISVTSADTIDNVISKLNSS
DLGVSAFKDKIWNGTEYVETIAFSSKATGAGGSIQAADSATADFMSGQLGFSLDADNKLTAYKEGTNAKVTINGFEMEKL
TNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEFVDKYNELVDSLNEKLKEEKYRDYTPLTSEQKEAMSDKEV
ELWEEKAKSGLLRNDSSISTGTNQMRTDFYTQVNADGKTYQLTEFGITTSSAYQLRGHLEINEEKLKAKIAEDPQGVANL
FTSGTNDSNYSDKGIMKRITNTLRSTVKSIEAKAGNSTMGASSYSIGKNLNSISTEITDMQDRLNTIENRYYSKFSAMDS
AIQKMNEQASYLSQLLVQ
>Mature_498_residues
MVTRITGLASGMDIDDIVSKLMQTERAPLDKLTQKKQTLEWQRDSYREVNSKIKELQDYMSKNTLTYPSTYQSKTVTSSN
ESVLTATGSVSAPNSSSTVEVASLATAATYKANNYTGYTQGDYNLAFNVVAPGETTAKTVNISVTSADTIDNVISKLNSS
DLGVSAFKDKIWNGTEYVETIAFSSKATGAGGSIQAADSATADFMSGQLGFSLDADNKLTAYKEGTNAKVTINGFEMEKL
TNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEFVDKYNELVDSLNEKLKEEKYRDYTPLTSEQKEAMSDKEV
ELWEEKAKSGLLRNDSSISTGTNQMRTDFYTQVNADGKTYQLTEFGITTSSAYQLRGHLEINEEKLKAKIAEDPQGVANL
FTSGTNDSNYSDKGIMKRITNTLRSTVKSIEAKAGNSTMGASSYSIGKNLNSISTEITDMQDRLNTIENRYYSKFSAMDS
AIQKMNEQASYLSQLLVQ

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family

Homologues:

Organism=Escherichia coli, GI1788233, Length=500, Percent_Identity=24.2, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLID_BACSU (P39738)

Other databases:

- EMBL:   Z31376
- EMBL:   U56901
- EMBL:   AL009126
- PIR:   H69623
- RefSeq:   NP_391414.1
- ProteinModelPortal:   P39738
- EnsemblBacteria:   EBBACT00000003131
- GeneID:   936728
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35340
- NMPDR:   fig|224308.1.peg.3540
- GenoList:   BSU35340
- GeneTree:   EBGT00050000001772
- HOGENOM:   HBG457129
- OMA:   QFTAMEK
- ProtClustDB:   PRK07737
- BioCyc:   BSUB:BSU35340-MONOMER
- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N

EC number: NA

Molecular weight: Translated: 54506; Mature: 54506

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTRITGLASGMDIDDIVSKLMQTERAPLDKLTQKKQTLEWQRDSYREVNSKIKELQDYM
CCEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKNTLTYPSTYQSKTVTSSNESVLTATGSVSAPNSSSTVEVASLATAATYKANNYTGYTQ
HCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHEEECCCCCCCCC
GDYNLAFNVVAPGETTAKTVNISVTSADTIDNVISKLNSSDLGVSAFKDKIWNGTEYVET
CCCEEEEEEECCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
IAFSSKATGAGGSIQAADSATADFMSGQLGFSLDADNKLTAYKEGTNAKVTINGFEMEKL
HHHCCCCCCCCCCEECCCCCHHHHHCCCCCEEECCCCCEEEEECCCCCEEEEECEEHHHH
TNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEFVDKYNELVDSLNEKLKEEK
CCCEEECCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDYTPLTSEQKEAMSDKEVELWEEKAKSGLLRNDSSISTGTNQMRTDFYTQVNADGKTY
HCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEE
QLTEFGITTSSAYQLRGHLEINEEKLKAKIAEDPQGVANLFTSGTNDSNYSDKGIMKRIT
EEEECCCCCCCCEEEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
NTLRSTVKSIEAKAGNSTMGASSYSIGKNLNSISTEITDMQDRLNTIENRYYSKFSAMDS
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIQKMNEQASYLSQLLVQ
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVTRITGLASGMDIDDIVSKLMQTERAPLDKLTQKKQTLEWQRDSYREVNSKIKELQDYM
CCEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKNTLTYPSTYQSKTVTSSNESVLTATGSVSAPNSSSTVEVASLATAATYKANNYTGYTQ
HCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCEEHHHHHHHHEEECCCCCCCCC
GDYNLAFNVVAPGETTAKTVNISVTSADTIDNVISKLNSSDLGVSAFKDKIWNGTEYVET
CCCEEEEEEECCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
IAFSSKATGAGGSIQAADSATADFMSGQLGFSLDADNKLTAYKEGTNAKVTINGFEMEKL
HHHCCCCCCCCCCEECCCCCHHHHHCCCCCEEECCCCCEEEEECCCCCEEEEECEEHHHH
TNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEFVDKYNELVDSLNEKLKEEK
CCCEEECCEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRDYTPLTSEQKEAMSDKEVELWEEKAKSGLLRNDSSISTGTNQMRTDFYTQVNADGKTY
HCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHEEECCCCCEE
QLTEFGITTSSAYQLRGHLEINEEKLKAKIAEDPQGVANLFTSGTNDSNYSDKGIMKRIT
EEEECCCCCCCCEEEEEEEEECHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
NTLRSTVKSIEAKAGNSTMGASSYSIGKNLNSISTEITDMQDRLNTIENRYYSKFSAMDS
HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIQKMNEQASYLSQLLVQ
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377