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The map label for this gene is yvcD

Identifier: 16080534

GI number: 16080534

Start: 3576165

End: 3577619

Strand: Reverse

Name: yvcD

Synonym: BSU34810

Alternate gene names: 16080534

Gene position: 3577619-3576165 (Counterclockwise)

Preceding gene: 16080535

Following gene: 16080533

Centisome position: 84.87

GC content: 45.77

Gene sequence:

>1455_bases
GTGGGAAAACACACTTCTGAACATAAAAATCACGCACAAATTGTCCAGCTGCTTCAAGATGGACAATATTTTTTTCATAA
AGGCTTGAAAGCGTATAAAGAGCGCAATCTAAAACGGGCAAGCAAACTGATTCAGCGCGCGGTTCATTTGGAGCCGGAGG
ATTCAGAGATGCTTTCACAGCTTGCGGTCATTTATTCGGAAATGGGCCAGTATCAAGAGTCGAACGATCTTCTTGACTAT
ATCATGGCAAATCTGGAGGCCGAAATGCCGGAGTGCCATTACTTTAAAGCGAATAACTTTGCCCATCTGGGGCTCTTCCA
GGAAGCTTATAAAGAAGCGGCCGCTTATTCTGATGCGGACCCGGATGGTGAATTCGCCGAAGAAAACGATAGTCTGCTTG
ATTTGCTCGATTTAGGAGACGACGGCATTGAGGATTCGTTGTATGATCAGGATGAACTGCTGGTGAAACAGGATCGGGCA
AAGTCATTGCTGGAAAGCGGCCAGCTTGCTGAAGCGGTTGCGGCGCTTGAGGAAATCACAACTGAATATCCGGAGCTTTG
GTCAGCATACAACAATCTCGCGCTTGCCTATTTCTATTCAGGAAACGTTGTAAAAGCGAAGCAAACCGCTTATGAAGTGC
TTTCTCATAATGAAGGAAATCTTCACGCCTTATGCAATCTTCTCGTTTTCTACTATTATGAAAGAGAAGACGAAAAAGTG
GCGGAATTGAGTGATCAGCTCTCCAATGTCTATCCGATGCTATTGGAGCAGCGTTATAAATTGGGTGCTACTTTGGCGCT
TGTCGGCCGCTACGAGATCGGATATAAATGGCTCAAATCATTATATAAAACCGGCTTTGAGGGTGACGACACCTTCTTTT
ACTGGCTTTCCTGCTCTGCTTATTTTACGGGACATACCGACTTTGCCGAGACGATCTGGAGAAAAGTCGAGTCGCAATAT
CCCGGCGAAGACCGCCCGGCGCCTTGGATTGAGCGGAGGGAAGCTCTTCCTTCATCTGTGGAGCAGCGACTCGCAGCCTA
TTATATCAGCAGCACAAAGGGAGAAACAGAGCATCTTGAAGCGGTGATACGCTCAAAGAGAATTACCGCTCCTTTTGAAA
CTCATTTTGTAAAGCTGCTTCTGAATGGAGATTCTGCGGCTGCTGACGTTTCAGAGGATGCACTTTTCGCTTATCAAACG
GTCAAACTATTAGAGCAAGCTGAAAAAGAAGAGATGAAAACAGAAGTCATGAGCTGCTGGGTTTTTCATGTCATCCAGCA
AATTCGTGCAGCTGCTCCGTTGAAGAATGAGAAAGGCTGGGCAGCAGCCATCTGTTATATTTGGAAAGAAGCCCATGGCA
AGCAAGACACGAAAAAAGACACAGCGGCCCGATTCGGCATCTCTCCGGCAACTTTGACGAAATATATGAAATATATTGAT
GATATTCTAGAATAG

Upstream 100 bases:

>100_bases
AAGAGGAGGGATTTTCCCAATCCTTCCTTTTGAACTATTGAGGGGCTTACGATTTATGGTATACTACTGACGGTAATATT
GTATAAAACGGAGGGTAGTT

Downstream 100 bases:

>100_bases
TAAATTTTAAAGAGTTGATTTATTTAATCGACTCTTTTTTTGTTAGATAGATTATATTAAGAAAATAATATCGACAGTTT
TTTTACACGCTTAAGAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MGKHTSEHKNHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLSQLAVIYSEMGQYQESNDLLDY
IMANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDADPDGEFAEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRA
KSLLESGQLAEAVAALEEITTEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDEKV
AELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKTGFEGDDTFFYWLSCSAYFTGHTDFAETIWRKVESQY
PGEDRPAPWIERREALPSSVEQRLAAYYISSTKGETEHLEAVIRSKRITAPFETHFVKLLLNGDSAAADVSEDALFAYQT
VKLLEQAEKEEMKTEVMSCWVFHVIQQIRAAAPLKNEKGWAAAICYIWKEAHGKQDTKKDTAARFGISPATLTKYMKYID
DILE

Sequences:

>Translated_484_residues
MGKHTSEHKNHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLSQLAVIYSEMGQYQESNDLLDY
IMANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDADPDGEFAEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRA
KSLLESGQLAEAVAALEEITTEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDEKV
AELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKTGFEGDDTFFYWLSCSAYFTGHTDFAETIWRKVESQY
PGEDRPAPWIERREALPSSVEQRLAAYYISSTKGETEHLEAVIRSKRITAPFETHFVKLLLNGDSAAADVSEDALFAYQT
VKLLEQAEKEEMKTEVMSCWVFHVIQQIRAAAPLKNEKGWAAAICYIWKEAHGKQDTKKDTAARFGISPATLTKYMKYID
DILE
>Mature_483_residues
GKHTSEHKNHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLSQLAVIYSEMGQYQESNDLLDYI
MANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDADPDGEFAEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRAK
SLLESGQLAEAVAALEEITTEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDEKVA
ELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKTGFEGDDTFFYWLSCSAYFTGHTDFAETIWRKVESQYP
GEDRPAPWIERREALPSSVEQRLAAYYISSTKGETEHLEAVIRSKRITAPFETHFVKLLLNGDSAAADVSEDALFAYQTV
KLLEQAEKEEMKTEVMSCWVFHVIQQIRAAAPLKNEKGWAAAICYIWKEAHGKQDTKKDTAARFGISPATLTKYMKYIDD
ILE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVCD_BACSU (O06968)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   E70031
- RefSeq:   NP_391361.1
- ProteinModelPortal:   O06968
- EnsemblBacteria:   EBBACT00000000888
- GeneID:   936542
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34810
- NMPDR:   fig|224308.1.peg.3487
- GenoList:   BSU34810
- GeneTree:   EBGT00050000001348
- HOGENOM:   HBG313860
- OMA:   YTKKDDE
- ProtClustDB:   CLSK887933
- BioCyc:   BSUB:BSU34810-MONOMER
- GO:   GO:0005488
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55376; Mature: 55244

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKHTSEHKNHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLSQ
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LAVIYSEMGQYQESNDLLDYIMANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDAD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEHHHHHHHHHHHHHCCCCCC
PDGEFAEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRAKSLLESGQLAEAVAALEEIT
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDEKV
HHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
AELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKTGFEGDDTFFYWLSCSA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
YFTGHTDFAETIWRKVESQYPGEDRPAPWIERREALPSSVEQRLAAYYISSTKGETEHLE
EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
AVIRSKRITAPFETHFVKLLLNGDSAAADVSEDALFAYQTVKLLEQAEKEEMKTEVMSCW
HHHHHCCCCCCHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFHVIQQIRAAAPLKNEKGWAAAICYIWKEAHGKQDTKKDTAARFGISPATLTKYMKYID
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
DILE
HHHC
>Mature Secondary Structure 
GKHTSEHKNHAQIVQLLQDGQYFFHKGLKAYKERNLKRASKLIQRAVHLEPEDSEMLSQ
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LAVIYSEMGQYQESNDLLDYIMANLEAEMPECHYFKANNFAHLGLFQEAYKEAAAYSDAD
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEHHHHHHHHHHHHHCCCCCC
PDGEFAEENDSLLDLLDLGDDGIEDSLYDQDELLVKQDRAKSLLESGQLAEAVAALEEIT
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
TEYPELWSAYNNLALAYFYSGNVVKAKQTAYEVLSHNEGNLHALCNLLVFYYYEREDEKV
HHHHHHHHHHCCCEEEEEECCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHH
AELSDQLSNVYPMLLEQRYKLGATLALVGRYEIGYKWLKSLYKTGFEGDDTFFYWLSCSA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
YFTGHTDFAETIWRKVESQYPGEDRPAPWIERREALPSSVEQRLAAYYISSTKGETEHLE
EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
AVIRSKRITAPFETHFVKLLLNGDSAAADVSEDALFAYQTVKLLEQAEKEEMKTEVMSCW
HHHHHCCCCCCHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFHVIQQIRAAAPLKNEKGWAAAICYIWKEAHGKQDTKKDTAARFGISPATLTKYMKYID
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
DILE
HHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377