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The map label for this gene is yvdJ

Identifier: 16080511

GI number: 16080511

Start: 3551479

End: 3552363

Strand: Reverse

Name: yvdJ

Synonym: BSU34580

Alternate gene names: 16080511

Gene position: 3552363-3551479 (Counterclockwise)

Preceding gene: 16080512

Following gene: 16080510

Centisome position: 84.27

GC content: 43.95

Gene sequence:

>885_bases
ATGAAGAATCTGGAGAATAAAAGCTTTATCATCCGCTGCCTGAAGGCGGCTGCATCCCCATCAGGTGTTTGCCGCTATGG
GAATACCTTCAGCTGGCTGCAGCTCTCTTTTCTCTTTCTGTTTTTAACGGCCTGCTTAATGGCGCCGTTAGCGGTTTCGT
TTGTGAAAATGGATCGCTTCAGCGTTTCATCTTTCATGCCGTCAGCGATTCAAGGAGTTAATGATCAATTTGCTGATCAA
TTGCAGGGTTTTCAAATCAGGAACGGAAAACTAACAGGCGGGAAGAGCTCTGAGAGGATTGAAGATGGGCAGAATGTGAT
GGCAGTCGATATGAAGCATGAATATGAGACAAGCGGTGAAAATGGGCGATTGAAAGTAACTGGATTTGAAAACGCCATCA
TATTTCAACCTGATCAACTGGTGATCACCGATCAAAACGAAACGGGGTTTTCTGTTGGCTATGCGAAAATGGACGTTAAG
CTCGAGAAACCAAACGTCCATGATGTAGAGGTCTTGATCGATACATTGTGGTTGGCACAGTATAAGCCGATGATCATGAT
GCTGGCATATACGGTGGTTTCTATGATCCAGCTTTTGTTAACGTTTGTTCTTGCAGGTGGCCTCTGGATCACAAAAATAT
CAAACATGGTCTCTATTGCATCATTCAAGGAAGCGGCCTCTATAGCGATTTGCGCATCAGCACTGCCGGCATTTGCGGCA
GCTGCTATCGGCATGGTTCATTTTGATTTGATTACTGTATTGATGATCCATTCGTGTGGCGTTACTTTGATGATCTCTTT
TGCATTTAGATATTTGACCAAAACCCGCCGTGATAATGGAAACTTACATTCGGGAGGAAATGATGATAAATCAGCGGTTA
TTTGA

Upstream 100 bases:

>100_bases
GTGCCATACTAGCCGCACTGCCGATATGCGTTCTATTCTTTTTTCTCCAAAAGAACTTTGTGTCCGGTTTGACAGCCGGC
GGAACAAAGGGGTAATGCCA

Downstream 100 bases:

>100_bases
GATTGATGAATGGAAAATCAAAACAAATACATTTAATAAGGAGCATACACGGCTGCTGGAAAGCCTGACGTCTCTTGCCA
ATGGCTATATGGGGGTCAGA

Product: component of transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRFSVSSFMPSAIQGVNDQFADQ
LQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGENGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVK
LEKPNVHDVEVLIDTLWLAQYKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAA
AAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI

Sequences:

>Translated_294_residues
MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRFSVSSFMPSAIQGVNDQFADQ
LQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGENGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVK
LEKPNVHDVEVLIDTLWLAQYKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAA
AAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI
>Mature_294_residues
MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRFSVSSFMPSAIQGVNDQFADQ
LQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGENGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVK
LEKPNVHDVEVLIDTLWLAQYKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAA
AAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI

Specific function: Could have a role in maltodextrin utilization

COG id: COG5521

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MALA_BACSU (O06992)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   B70034
- RefSeq:   NP_391338.1
- ProteinModelPortal:   O06992
- EnsemblBacteria:   EBBACT00000002539
- GeneID:   936479
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34580
- NMPDR:   fig|224308.1.peg.3464
- GenoList:   BSU34580
- GeneTree:   EBGT00050000006468
- HOGENOM:   HBG033482
- OMA:   TACLMAP
- ProtClustDB:   CLSK238007
- BioCyc:   BSUB:BSU34580-MONOMER
- InterPro:   IPR009574

Pfam domain/function: PF06691 DUF1189

EC number: NA

Molecular weight: Translated: 32330; Mature: 32330

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xfd99aa4)-; HASH(0x11b8d91c)-; HASH(0x1288b07c)-; HASH(0x11e16da0)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRF
CCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSSFMPSAIQGVNDQFADQLQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGE
HHHHHCHHHHHCCCHHHHHHHCCEEEECCEECCCCCCHHHHCCCCEEEEEECCCCCCCCC
NGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVKLEKPNVHDVEVLIDTLWLAQ
CCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHH
YKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure
MKNLENKSFIIRCLKAAASPSGVCRYGNTFSWLQLSFLFLFLTACLMAPLAVSFVKMDRF
CCCCCHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVSSFMPSAIQGVNDQFADQLQGFQIRNGKLTGGKSSERIEDGQNVMAVDMKHEYETSGE
HHHHHCHHHHHCCCHHHHHHHCCEEEECCEECCCCCCHHHHCCCCEEEEEECCCCCCCCC
NGRLKVTGFENAIIFQPDQLVITDQNETGFSVGYAKMDVKLEKPNVHDVEVLIDTLWLAQ
CCEEEEEECCCEEEECCCEEEEECCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHH
YKPMIMMLAYTVVSMIQLLLTFVLAGGLWITKISNMVSIASFKEAASIAICASALPAFAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIGMVHFDLITVLMIHSCGVTLMISFAFRYLTKTRRDNGNLHSGGNDDKSAVI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377