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The map label for this gene is yvfS

Identifier: 16080461

GI number: 16080461

Start: 3497614

End: 3498351

Strand: Reverse

Name: yvfS

Synonym: BSU34080

Alternate gene names: 16080461

Gene position: 3498351-3497614 (Counterclockwise)

Preceding gene: 16080462

Following gene: 16080460

Centisome position: 82.99

GC content: 45.39

Gene sequence:

>738_bases
GTGAACGTGCTGCAAAAGCAAAGCATCGCTGAAATGAAAAGGGTGCTTAGGAACAAGTACTTTGTGCTTTGGTCTCTGAT
CATGCCGATTGCCTTTTATTATTTCTTTACAAATGTAGTGAATACCAACGTCCCTGATCAACGTGCATGGGAAGCCCATT
ACCTGATGTCGATGACAGTCTTCAGCGTGATGGGTTCCTCTATCATGACGCTTGGCATCCGAATGGTACAAGAACGGTCA
CAAGGCTGGGCCGCCTTTATCCGCCTTACGCCTCTTCCGGATCATATCTATTTATCAGCTCAGATGATCGGCCAAAGTGT
CATTCACGTTTTATCAATTACCGTCATATTTCTGTTCGGCGCAATCATCAATGATATTGCCTTGTCACCGTTTGAATGGA
TGATGAGCGGACTGTGGATTTTGTTTGGCGCATTGCCTTTTTTAGCATTAGGCACACTAATCGGCCTCATGAGAAAAGTA
GAAACAGCGGCCGGAATCAGTAATGTGCTTTATATGCTGCTGGCTTTAGGCGGAGGGATGTGGATGCCGTTTGAGGTCAT
GCCTGACATGATGCAGAGCATTGGCCAGTGGCTTCCGTCTTATCATTTCGGGAGCGGAGCGTGGGAACTTGTCCGGGGTG
GGAGTCCGACTTGGAAAAATATTCTGATATTAATCGCTTATATGATGCTCTTCATGCTACTATCTAAATATATAAGAAGA
AAACAAGAAGCGGTGTAA

Upstream 100 bases:

>100_bases
CTTTCAAGAAAACATACATGCACGGGATATTCGAATTGAGCAAGCAACGCTCGATGAGGCATTTCGCCAGCTGGCTGACG
GCAACAGGGAGGCGATGTGA

Downstream 100 bases:

>100_bases
TACATGAAAAAGGCAATATCTATTTTCCCGAAGGAATTCGGGTTTTTCCCTTATATCTTTCTGGTGTATACGATTATGCC
GTTCCTCTCTTTATTAAAAG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MNVLQKQSIAEMKRVLRNKYFVLWSLIMPIAFYYFFTNVVNTNVPDQRAWEAHYLMSMTVFSVMGSSIMTLGIRMVQERS
QGWAAFIRLTPLPDHIYLSAQMIGQSVIHVLSITVIFLFGAIINDIALSPFEWMMSGLWILFGALPFLALGTLIGLMRKV
ETAAGISNVLYMLLALGGGMWMPFEVMPDMMQSIGQWLPSYHFGSGAWELVRGGSPTWKNILILIAYMMLFMLLSKYIRR
KQEAV

Sequences:

>Translated_245_residues
MNVLQKQSIAEMKRVLRNKYFVLWSLIMPIAFYYFFTNVVNTNVPDQRAWEAHYLMSMTVFSVMGSSIMTLGIRMVQERS
QGWAAFIRLTPLPDHIYLSAQMIGQSVIHVLSITVIFLFGAIINDIALSPFEWMMSGLWILFGALPFLALGTLIGLMRKV
ETAAGISNVLYMLLALGGGMWMPFEVMPDMMQSIGQWLPSYHFGSGAWELVRGGSPTWKNILILIAYMMLFMLLSKYIRR
KQEAV
>Mature_245_residues
MNVLQKQSIAEMKRVLRNKYFVLWSLIMPIAFYYFFTNVVNTNVPDQRAWEAHYLMSMTVFSVMGSSIMTLGIRMVQERS
QGWAAFIRLTPLPDHIYLSAQMIGQSVIHVLSITVIFLFGAIINDIALSPFEWMMSGLWILFGALPFLALGTLIGLMRKV
ETAAGISNVLYMLLALGGGMWMPFEVMPDMMQSIGQWLPSYHFGSGAWELVRGGSPTWKNILILIAYMMLFMLLSKYIRR
KQEAV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVFS_BACSU (O07017)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   B70039
- RefSeq:   NP_391288.1
- ProteinModelPortal:   O07017
- EnsemblBacteria:   EBBACT00000003790
- GeneID:   936302
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34080
- NMPDR:   fig|224308.1.peg.3414
- GenoList:   BSU34080
- GeneTree:   EBGT00050000000925
- HOGENOM:   HBG700931
- OMA:   SPVNMVE
- ProtClustDB:   CLSK887899
- BioCyc:   BSUB:BSU34080-MONOMER
- InterPro:   IPR000412
- InterPro:   IPR013525

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 27927; Mature: 27927

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x40c0205c)-; HASH(0x12725760)-; HASH(0x40c226d8)-; HASH(0x118bf354)-; HASH(0x10391c9c)-; HASH(0x11e37658)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.6 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.6 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCH
>Mature Secondary Structure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HHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377