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The map label for this gene is yvfU

Identifier: 16080459

GI number: 16080459

Start: 3495876

End: 3496478

Strand: Reverse

Name: yvfU

Synonym: BSU34060

Alternate gene names: 16080459

Gene position: 3496478-3495876 (Counterclockwise)

Preceding gene: 16080460

Following gene: 16080458

Centisome position: 82.94

GC content: 46.1

Gene sequence:

>603_bases
ATGATTCGTCTGTTTATTGCTGAGGACCAGCGAATGCTTTTAGGCGCTTTGGGATCTTTGCTTGATTTAGAAGAGGATAT
GACAGTCATCGGACAAGCATTAAACGGGGAAGAGGCGCTACATGCTATTTTGAAGCTGGAGCCGGATGTATGCATTATGG
ACATTGAAATGCCGGTTCGAAGCGGGCTGAATGTGGCAGAGGAATTAATGAAAAAAGGCTGCGTCAGCAAGGTCATTATT
TTAACCACCTTTGCCCGCCCCGGATATTTTGAACGCGCCGTAAAGGCCGGTGCACATGGCTATCTGCTGAAAGACGGTGA
AATTGACGATCTGGCCGATGCCATTCGAAAATGTGTAAAGGGAAAACGTGTCTTCAGCCCTGAGCTGACGTTTAATATGA
TGCGAGACGAAAATCCGCTAACCGTTAGAGAGCAAGAAATTCTGAGGCTTGCGGCTTTAGGCAAGACAACAAAAGACATT
ACGCTGGAGCTCTATTTATCTCAAGGCACAGTTCGAAACTATATCTCAGAAATCATCCAAAAGCTTAATGCGAAAAATCG
GACAGAAGCCGCCAGCATCGCTGAGGAAAAGGGCTGGATCTAA

Upstream 100 bases:

>100_bases
CTCATTGAAGGGGGATTAACGGTTTCAGACCATAACGGAACGGTTGTGGCACTGACGATTCCGCTTATTAAAAAAGCAGA
ATGATTGGAGGACGAAAAGA

Downstream 100 bases:

>100_bases
CCATATACTGCACTCCTGGGAGATCGGGAGTGTTTTTGATATGCCACAAATGAAAATATCCCTAGAAAACTCTTTCCTTC
CATTGTCAGAATAGTGTACG

Product: two-component response regulator YvfT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVRSGLNVAEELMKKGCVSKVII
LTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVKGKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDI
TLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKGWI

Sequences:

>Translated_200_residues
MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVRSGLNVAEELMKKGCVSKVII
LTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVKGKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDI
TLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKGWI
>Mature_200_residues
MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVRSGLNVAEELMKKGCVSKVII
LTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVKGKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDI
TLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKGWI

Specific function: Member of the two-component regulatory system yvfT/yvfU

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1790102, Length=192, Percent_Identity=31.7708333333333, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788521, Length=199, Percent_Identity=31.6582914572864, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1787473, Length=199, Percent_Identity=32.1608040201005, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=26.4423076923077, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788712, Length=196, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786747, Length=149, Percent_Identity=31.5436241610738, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVFU_BACSU (O07019)

Other databases:

- EMBL:   Z94043
- EMBL:   AL009126
- PIR:   D70039
- RefSeq:   NP_391286.1
- HSSP:   P11470
- ProteinModelPortal:   O07019
- SMR:   O07019
- EnsemblBacteria:   EBBACT00000000955
- GeneID:   938523
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU34060
- NMPDR:   fig|224308.1.peg.3412
- GenoList:   BSU34060
- GeneTree:   EBGT00070000032004
- HOGENOM:   HBG753323
- OMA:   ESTETIA
- ProtClustDB:   CLSK237236
- BioCyc:   BSUB:BSU34060-MONOMER
- GO:   GO:0005737
- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421
- SMART:   SM00448

Pfam domain/function: PF00196 GerE; PF00072 Response_reg; SSF46894 Bipartite_resp_reg_C-effector; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 22323; Mature: 22323

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50043 HTH_LUXR_2; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVR
CEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCHH
SGLNVAEELMKKGCVSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVK
CCCHHHHHHHHCCHHHHHHHEEECCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHC
GKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQ
CCCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
KLNAKNRTEAASIAEEKGWI
HHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIRLFIAEDQRMLLGALGSLLDLEEDMTVIGQALNGEEALHAILKLEPDVCIMDIEMPVR
CEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCHH
SGLNVAEELMKKGCVSKVIILTTFARPGYFERAVKAGAHGYLLKDGEIDDLADAIRKCVK
CCCHHHHHHHHCCHHHHHHHEEECCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHC
GKRVFSPELTFNMMRDENPLTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQ
CCCCCCCCHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
KLNAKNRTEAASIAEEKGWI
HHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377