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The map label for this gene is yusF

Identifier: 16080330

GI number: 16080330

Start: 3365391

End: 3365831

Strand: Reverse

Name: yusF

Synonym: BSU32780

Alternate gene names: 16080330

Gene position: 3365831-3365391 (Counterclockwise)

Preceding gene: 16080331

Following gene: 16080329

Centisome position: 79.84

GC content: 43.76

Gene sequence:

>441_bases
ATGTTGGCGGTGAATTTCACTGCCTTCTTTTACAATCTGAACATTTCAAATTTGACGCGGCAGGTGAACAAGATGAAGAT
GGATGAGCTGGAAAAGGTTATGATTGTCGAGGGGAAATCAGATAAAGAGAAAATCGAAAGCGTCCTGAATGAACCGATGC
GCATTATCTGCACAAACGGAACAATCAGCCAGCTGAGGCTCGAGGAATTGGCTGACGAGCTTTATGATAAAGACGTCTAT
ATATTAGTTGATGCTGATGAATCAGGTGAGAAATTGAGAAAACAGCTGAAGCGTGAATTTAATGAAGCCTGCCATCTCCA
TGTCGACAGAGCCTATAAGGAAGTAGCGGCTGCGCCCAGGCACCATATCGCTTCTGTATTGCTGCGTGCGAATCTGAATG
TCCATACTATTTTTCTTGAAAGAAAGTCCCGAGGTGTATAG

Upstream 100 bases:

>100_bases
GTTATTCCTTTGAAAATGAGAAATTTTATAAGACAGCCGATGTGGTCTCTGGAGACGACGCAAAATATGTAGATTGTGAC
TACGAAAACGGCTGGTGTTA

Downstream 100 bases:

>100_bases
CATGAAAGAACTCCAAGAACACGAACTTGATCACATTGAAGATGATGTGTACCTTCTATATTTATATACTCCGTTTTGCG
GCACCTGCCAGCTTGCAAGC

Product: ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MLAVNFTAFFYNLNISNLTRQVNKMKMDELEKVMIVEGKSDKEKIESVLNEPMRIICTNGTISQLRLEELADELYDKDVY
ILVDADESGEKLRKQLKREFNEACHLHVDRAYKEVAAAPRHHIASVLLRANLNVHTIFLERKSRGV

Sequences:

>Translated_146_residues
MLAVNFTAFFYNLNISNLTRQVNKMKMDELEKVMIVEGKSDKEKIESVLNEPMRIICTNGTISQLRLEELADELYDKDVY
ILVDADESGEKLRKQLKREFNEACHLHVDRAYKEVAAAPRHHIASVLLRANLNVHTIFLERKSRGV
>Mature_146_residues
MLAVNFTAFFYNLNISNLTRQVNKMKMDELEKVMIVEGKSDKEKIESVLNEPMRIICTNGTISQLRLEELADELYDKDVY
ILVDADESGEKLRKQLKREFNEACHLHVDRAYKEVAAAPRHHIASVLLRANLNVHTIFLERKSRGV

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUSF_BACSU (O32172)

Other databases:

- EMBL:   AL009126
- PIR:   G70020
- RefSeq:   NP_391157.1
- ProteinModelPortal:   O32172
- SMR:   O32172
- EnsemblBacteria:   EBBACT00000003655
- GeneID:   936707
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32780
- NMPDR:   fig|224308.1.peg.3283
- GenoList:   BSU32780
- GeneTree:   EBGT00050000001232
- HOGENOM:   HBG313840
- OMA:   IICTNGT
- ProtClustDB:   CLSK884938
- BioCyc:   BSUB:BSU32780-MONOMER
- InterPro:   IPR006171
- SMART:   SM00493

Pfam domain/function: PF01751 Toprim

EC number: NA

Molecular weight: Translated: 16889; Mature: 16889

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVNFTAFFYNLNISNLTRQVNKMKMDELEKVMIVEGKSDKEKIESVLNEPMRIICTNG
CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCEEEEECCC
TISQLRLEELADELYDKDVYILVDADESGEKLRKQLKREFNEACHLHVDRAYKEVAAAPR
CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HHIASVLLRANLNVHTIFLERKSRGV
HHHHHHHHHCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLAVNFTAFFYNLNISNLTRQVNKMKMDELEKVMIVEGKSDKEKIESVLNEPMRIICTNG
CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHCCCEEEEECCC
TISQLRLEELADELYDKDVYILVDADESGEKLRKQLKREFNEACHLHVDRAYKEVAAAPR
CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
HHIASVLLRANLNVHTIFLERKSRGV
HHHHHHHHHCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377