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The map label for this gene is yteT

Identifier: 16080062

GI number: 16080062

Start: 3079333

End: 3080619

Strand: Reverse

Name: yteT

Synonym: BSU30100

Alternate gene names: 16080062

Gene position: 3080619-3079333 (Counterclockwise)

Preceding gene: 255767689

Following gene: 16080061

Centisome position: 73.08

GC content: 47.01

Gene sequence:

>1287_bases
TTGAAGAACATCGTCTTTTGCGGATTGAGCAGCAGAGCATTCAGTATGTTTATCAAACCACTGATGGAGCGGTTTTCAAC
TCATTATGAGATTACGGGATTGCTGGATGCCGATCCGAAACGTTTTGCCGTTTGCAAGAAGAAATTTCCCGAGCTGGCCC
ACGTGCCTGAGTTTAGCGAAGATGCTTTTGACGAGATGATGCGCGTCTCAAAGCCTGATATCGTCATTGTGGCAGGCAGG
GACGATACGCATGTCGCATATATTGTAAAAAGCCTTCAGTGGAATACAGATGTGATTACTGAAAAACCAATGGTGACAAC
AGTGCAGGATGCGAATCGGGTGCTTGAAGCGGAGGCCAAAAGCGAAGGAAAAGTCACCGTCGCGTTTAACTATCGCTACA
GCCCGTTTCATCGGAAAATAAAAGAAATGATTCTGGACGGAAAAATAGGCAGGGTCACTTCTGTTGATTTAAATTGGTAT
ATTGATACGTATCATGGCGCCAGCTATTTTAAACGCTGGAACAGGTCGAGACAGTTTTCCGGCGGTCTTTCTGTCCATAA
ATCAACACATCACTTCGATCTCGTCAATTGGTGGCTCGGGCAAAATCCGGAAGAGGTATTTGCTTATGGCGCCTTGAATT
ACTATGGGCCGGACAGTGAGTGGAACCCCTTGCCGGAAGAAGACGGGCGTTTTTGCGGGACGTGCCGTGTTAAAGAAAAA
TGCCACTACTATTCAAGGTGGCATCCCCGTTCCTCTAAAGCTTCTATAAAGGATGATCATCTTGAAGCAGGAGACCAGTC
CAGCTTATATACTGCATACAGGCCTGACGCGTGTATTTTTGACGAGGAAATTGACATCGAGGATACGTACGTGGCGGCAG
TCAAATATGATGGCGGCGCACTGTTAAGCTACTCGATTATTTTTTCGGCCCCGTATGAAGGCTACCGGCTGACGATCAAC
GGCACAAAAGGACGTATTGAATCAAATGAATTTCACGAACCTTCCAGAATTCCGTTTGCTTTTCCTGAGCAGACAATCGA
ATACTATCCGCTTTTTGAATCAAAGCAGACGATACAAGTGGTCAAAAATGAAGGGGGGCATGGCGGAGGTGATCCGCTTT
TGCTTGAGGATCTTTTTTTAGGGAAAGACCCGCTGCGCCGCTATGATATTTTAGCCGGGGCTGAAGCTGGAGCCTACTCC
ATCGCGGTTGGTGAGGGAATGTGGCGCTCGGTTGCCGAAAAGAAGCCGATCGGCATGAAAGAGCTTTTTCAGATGCAGAA
TGTATAA

Upstream 100 bases:

>100_bases
ATCGCGATATGGCGGCGTTTATCCCTGTGTATGCTGAAAAAACAGAGGAAGCGCTGCAGCTGATTTCTCAACTAACTGAA
GCCCGATAGAGGTGAGGATA

Downstream 100 bases:

>100_bases
TGCAAAAAAGGAGGGGGCGCCATGGAACATGATGGCTCACTGGGACGGATGCTGCGTTTTTGCGAATGGATTATGAGATT
TGCGTATACAAACTTGCTGT

Product: dehydrogenase of rhamnogalaturonan degradation

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSEDAFDEMMRVSKPDIVIVAGR
DDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAKSEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWY
IDTYHGASYFKRWNRSRQFSGGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK
CHYYSRWHPRSSKASIKDDHLEAGDQSSLYTAYRPDACIFDEEIDIEDTYVAAVKYDGGALLSYSIIFSAPYEGYRLTIN
GTKGRIESNEFHEPSRIPFAFPEQTIEYYPLFESKQTIQVVKNEGGHGGGDPLLLEDLFLGKDPLRRYDILAGAEAGAYS
IAVGEGMWRSVAEKKPIGMKELFQMQNV

Sequences:

>Translated_428_residues
MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSEDAFDEMMRVSKPDIVIVAGR
DDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAKSEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWY
IDTYHGASYFKRWNRSRQFSGGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK
CHYYSRWHPRSSKASIKDDHLEAGDQSSLYTAYRPDACIFDEEIDIEDTYVAAVKYDGGALLSYSIIFSAPYEGYRLTIN
GTKGRIESNEFHEPSRIPFAFPEQTIEYYPLFESKQTIQVVKNEGGHGGGDPLLLEDLFLGKDPLRRYDILAGAEAGAYS
IAVGEGMWRSVAEKKPIGMKELFQMQNV
>Mature_428_residues
MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSEDAFDEMMRVSKPDIVIVAGR
DDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAKSEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWY
IDTYHGASYFKRWNRSRQFSGGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK
CHYYSRWHPRSSKASIKDDHLEAGDQSSLYTAYRPDACIFDEEIDIEDTYVAAVKYDGGALLSYSIIFSAPYEGYRLTIN
GTKGRIESNEFHEPSRIPFAFPEQTIEYYPLFESKQTIQVVKNEGGHGGGDPLLLEDLFLGKDPLRRYDILAGAEAGAYS
IAVGEGMWRSVAEKKPIGMKELFQMQNV

Specific function: May play a role in the degradation of type I rhamnogalacturonan derived from plant cell walls

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTET_BACSU (O34371)

Other databases:

- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   C69991
- RefSeq:   NP_390888.1
- ProteinModelPortal:   O34371
- EnsemblBacteria:   EBBACT00000000119
- GeneID:   937274
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30100
- NMPDR:   fig|224308.1.peg.3013
- GenoList:   BSU30100
- GeneTree:   EBGT00050000000832
- HOGENOM:   HBG345174
- OMA:   HKSTHHF
- ProtClustDB:   CLSK872721
- BioCyc:   BSUB:BSU30100-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C

EC number: 1.-.-.- [C]

Molecular weight: Translated: 48893; Mature: 48893

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSE
CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCHHCCCCCCH
DAFDEMMRVSKPDIVIVAGRDDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAK
HHHHHHHHCCCCCEEEEECCCCCCCEEEEHHHCCCCCEECCCCCEEEHHHHHHHHHHCCC
SEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWYIDTYHGASYFKRWNRSRQFS
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC
GGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK
CCCEECCCCCCEEEEHHHCCCCHHHHEEEECEEECCCCCCCCCCCCCCCCEEEEEEEHHH
CHYYSRWHPRSSKASIKDDHLEAGDQSSLYTAYRPDACIFDEEIDIEDTYVAAVKYDGGA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCCEEEEEEEECCCC
LLSYSIIFSAPYEGYRLTINGTKGRIESNEFHEPSRIPFAFPEQTIEYYPLFESKQTIQV
EEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEE
VKNEGGHGGGDPLLLEDLFLGKDPLRRYDILAGAEAGAYSIAVGEGMWRSVAEKKPIGMK
EECCCCCCCCCCEEEHHHHCCCCCHHHHHHEECCCCCEEEEEECCCHHHHHHHCCCCCHH
ELFQMQNV
HHHHHHCC
>Mature Secondary Structure
MKNIVFCGLSSRAFSMFIKPLMERFSTHYEITGLLDADPKRFAVCKKKFPELAHVPEFSE
CCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCHHCCCCCCH
DAFDEMMRVSKPDIVIVAGRDDTHVAYIVKSLQWNTDVITEKPMVTTVQDANRVLEAEAK
HHHHHHHHCCCCCEEEEECCCCCCCEEEEHHHCCCCCEECCCCCEEEHHHHHHHHHHCCC
SEGKVTVAFNYRYSPFHRKIKEMILDGKIGRVTSVDLNWYIDTYHGASYFKRWNRSRQFS
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHCCCCCCC
GGLSVHKSTHHFDLVNWWLGQNPEEVFAYGALNYYGPDSEWNPLPEEDGRFCGTCRVKEK
CCCEECCCCCCEEEEHHHCCCCHHHHEEEECEEECCCCCCCCCCCCCCCCEEEEEEEHHH
CHYYSRWHPRSSKASIKDDHLEAGDQSSLYTAYRPDACIFDEEIDIEDTYVAAVKYDGGA
HHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCCCCEEEEEEEECCCC
LLSYSIIFSAPYEGYRLTINGTKGRIESNEFHEPSRIPFAFPEQTIEYYPLFESKQTIQV
EEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEE
VKNEGGHGGGDPLLLEDLFLGKDPLRRYDILAGAEAGAYSIAVGEGMWRSVAEKKPIGMK
EECCCCCCCCCCEEEHHHHCCCCCHHHHHHEECCCCCEEEEEECCCHHHHHHHCCCCCHH
ELFQMQNV
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377