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The map label for this gene is ysmA

Identifier: 16079894

GI number: 16079894

Start: 2905067

End: 2905510

Strand: Reverse

Name: ysmA

Synonym: BSU28420

Alternate gene names: 16079894

Gene position: 2905510-2905067 (Counterclockwise)

Preceding gene: 16079895

Following gene: 255767655

Centisome position: 68.92

GC content: 43.24

Gene sequence:

>444_bases
ATGAAGCTTCCCGCTTATATTGATATGCCGTTTCAAGAATGGAAAACATCCTTTTCTTTTTTCAATAAGGTATCCGTAAG
ATTTTCCGAGACAGACATGTTTGGGCATATGAATAATGTAACCCCTTTTATATATTTTGAGGAGGTGCGGATTTCTTATT
TTAAAAAGCTGAATATGATGAGTGAAAACAAACAGACCATGACAGTCGTGGCAAGCCAGCAATGCGATTATTTGCGCCAA
GTCATGCCTTATGAAGAGTTGCGCATCTATGTGAAAACAAGCGCAGTCGGCAGTTCATCTCTTACCTTGCACTATCTCGG
AGAGAACCTCGAAGGCGAACCCTGCTTCACCGGGGCAGTCGTGATGGTTCAAGTCTCAAAGGAAAGCGGCAAGGCTGTCA
GCTGGACGGATGAGGAGAAAGAAACGCTTCTTCATACACGATAA

Upstream 100 bases:

>100_bases
ACAAGCGTTCCGCAATTTCTTCGGAAGCGACAGAGTATAAGAAGAAAAAACCTCTTCCGCATGGGAGAGGTTTTTTTAAA
CAATAAGGAGATGAAAAAAG

Downstream 100 bases:

>100_bases
ACTAATTATCTTGTAAACGTCACCTCCTGCGCCCTTCTTACATATGATATCTCGACTATATCAAAACCCATTCGTTTCTG
ATTCGCTCTCACCTTAGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKLPAYIDMPFQEWKTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISYFKKLNMMSENKQTMTVVASQQCDYLRQ
VMPYEELRIYVKTSAVGSSSLTLHYLGENLEGEPCFTGAVVMVQVSKESGKAVSWTDEEKETLLHTR

Sequences:

>Translated_147_residues
MKLPAYIDMPFQEWKTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISYFKKLNMMSENKQTMTVVASQQCDYLRQ
VMPYEELRIYVKTSAVGSSSLTLHYLGENLEGEPCFTGAVVMVQVSKESGKAVSWTDEEKETLLHTR
>Mature_147_residues
MKLPAYIDMPFQEWKTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISYFKKLNMMSENKQTMTVVASQQCDYLRQ
VMPYEELRIYVKTSAVGSSSLTLHYLGENLEGEPCFTGAVVMVQVSKESGKAVSWTDEEKETLLHTR

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSMA_BACSU (P11469)

Other databases:

- EMBL:   M17642
- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   B27893
- RefSeq:   NP_390720.1
- ProteinModelPortal:   P11469
- SMR:   P11469
- EnsemblBacteria:   EBBACT00000001734
- GeneID:   937652
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28420
- NMPDR:   fig|224308.1.peg.2845
- GenoList:   BSU28420
- GeneTree:   EBGT00050000002071
- HOGENOM:   HBG701070
- OMA:   FGHMNNV
- ProtClustDB:   CLSK2518256
- BioCyc:   BSUB:BSU28420-MONOMER
- InterPro:   IPR006683

Pfam domain/function: PF03061 4HBT

EC number: NA

Molecular weight: Translated: 17074; Mature: 17074

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPAYIDMPFQEWKTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISYFKKLNMM
CCCCCEECCCHHHHHHHHHHHHEEEEEEECCHHCCCCCCCCEEEEEHHHHHHHHHHHHHC
SENKQTMTVVASQQCDYLRQVMPYEELRIYVKTSAVGSSSLTLHYLGENLEGEPCFTGAV
CCCCEEEEEEECHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
VMVQVSKESGKAVSWTDEEKETLLHTR
EEEEEECCCCCEECCCCCHHHHHCCCC
>Mature Secondary Structure
MKLPAYIDMPFQEWKTSFSFFNKVSVRFSETDMFGHMNNVTPFIYFEEVRISYFKKLNMM
CCCCCEECCCHHHHHHHHHHHHEEEEEEECCHHCCCCCCCCEEEEEHHHHHHHHHHHHHC
SENKQTMTVVASQQCDYLRQVMPYEELRIYVKTSAVGSSSLTLHYLGENLEGEPCFTGAV
CCCCEEEEEEECHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE
VMVQVSKESGKAVSWTDEEKETLLHTR
EEEEEECCCCCEECCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3114423; 8969504; 9384377